AMCG00005112 (ptbp2,ptbp2b,LOC107677766,LOC107718150,LOC107570490)


Basic Information

Item Value
gene id AMCG00005112
gene name ptbp2,ptbp2b,LOC107677766,LOC107718150,LOC107570490
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15792614 ~ 15814059 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005112
CACAACATTACATAACATAACCCCTggtcttatttttaattgcattgcgTAGGGAACATTTTAACTTCCAAAAAACATGCTTGGACTGGTTCTTCTTACACGAGTCCACGCATACGTGAAGAAACCCGCCTTTATAGTCTTAAACAGAAAGTGaaagaagacagacagagagctACATTCAAACCAAGGCGCCATTTGCTCCCGTCGGCCGCGCAGGGTGTCGTCCCTCCCACGCAGGGTTCATTTCAGTGCCAGCGATTCGGCGGCGAACATTCCCGTCAGCGATTCGGCCCCGTTCGGCCATTTCCGCCGAGGCGTCCGCCACCATTTTGTCGTCTTGCGTGTTGCTGGCAGAGGTGCTGTACTGTGGTAGATCACATCGTAGAGATAGCTAATCCGGCAATGGACGGcatTGTCACTGATGTTGCAGTTGGCGTAAAGAGAGGATCAGACGAGCTACTCTCTAGCAGTCTGTACAACAGCCCTAACTCTAATATGAGTGGCATGGTTGTAACTGCTAATGGAAATGATAGCAAGAAGTTAAGAGTTGAAGACAGAATGGATTGCCCTCCTTCACGAGTTCTTCACATCAGAAAGCTGCCCAATGAAGTGACTGAGACGGAGGTTATTGCTCTGGGTTTGCCCTTTGGGAAGGTCACTAATATTCTGATGCTCAAAGGAAAGAATCAGGCGTTCTTGGAGCTAGGAACCGAGGAGGCAGCGATTACCATGGTTAACTATTACACGGCCGTGACACCGCATGTGCGCAATGTGCCCGTGTTCATCCAGTACTCCAATCATAAAGAACTCAAAACAGACAATGCTCTCAACCAGCGTGCACAAGCAGTCCTTCAGGCTGTGACTGCCGTTCAGGCCGCCAGCACACCAACGTCAGGGACGACGGCGAGCGAGAGCGCATTAACACCTGCGCCGAGCCCCGTGCTCAGAATAATCATCGATAATATGTTCTACCCAGTTACACTGGATGTCCTTCAACAGATCTTTTCAAAGTTTGGAACAGTTATGAAAATCATCACATTCACAAAGAACAACCAGTTTCAAGCTTTACTTCAATTTAATGACCCAGTGAACGCCCAGCAAGCAAAACTGGCTCTGGACGGTCAGAATATTTATAACGCCTGCTGTACACTGCGCATTGACTTTTCGAAACTGGTGAATTTAAACGTGAAGTACAACAACGACAAGAGCCGTGACTACACCCGACCTGAGCTTCCAGCGGGAGACGGTCAGCCCAGTATGGACCCCTCTGTGGCCGCGGCCTTCAATAAGGATTCCTCGCTGCTTGGAGCTCTCAGTCCCCTGAGCGCGGCGGCAGCGGCGGCAGCGGCCGCAGGGAGGGTGGCACTGTCGGGGGTCTCGGGCACCAGCAGTGTGCTTCTGGTCAGCAATCTCAACGAGGAGGTCAgtGTGTATGGCGATGCTCAGCGCGTGAAGATACTGTACAATAAGAAAGACAGTGCTCTCATACAAATGGCTGACGGGAATCAGGCGCAGCTTGCAATGAGTCATTTAAACGGCCAGAAGATGTATGGGAAGATAATCAGAGTGACCTTGTCGAAGCATCAGACGGTACAGTTGCCGAGAGAGGGGCTTGATGACCAAGGGCTCACGAAGGATTTCACAAACTCGCCGCTGCATCGCTTTAAGAAACCGGGCTCAAAGAACTTCCAGAATATTTTCCCTCCTTCAGCGACCCTTCACCTGTCAAATATCCCACAAGACATAACCGAAGAAGACCTCCGAGTACTGTTCTCAAACTCCGGTGGCACTGTGAAAGCCTTCAAGTTTTTCCAAGATCACAAAATGGCACTGCTGCAGATGGCAACGGTCGAAGAAGCAATTCAGGCCTTGATTGACCTACACAATTACAATATGGGAGATAATCACCACCTGAGAGTCTCTTTCTCCAAATCAACCATTTGATCAGGATTGCAGGATGATAACAATGTGTTTCACGCTCCTTAGAGGCGTTACCTGTTGACTGTTTCCGGACACTGGGGACCacagtttgacattttaagttttatCAGTCATTCCTTAAAGAATATGATGGATTatcaaaaaaaaagtgatacagCAGTGATACTAGGCTGCATTGAAGacatttcccccccccattTATACGTTAGGCAAGCCATtaacttttttccattttcttcatAAGAAGGAAGTAAGTAAATTcctctttttattataatttggttAGTTGACAAGATATGTGCCTTACTTGACAAAATAGTATCAACACTTTTACATTGGTAATTTAGTATCCGTACATTTACATAAACTCTTATAGTTTACTATTTAGGCACATTGGTTCTGATGGTGTAAGAAGCGGATGTGTAAAAAGATTAGGATTTTCTGTATGTATCTGTACAGTTTGTGAAGTTCTGCCCCTCAAAGTGTAGTCCTTATTATTAGCGCTGTGATCAATTGATTTCtgcagattcttttttttttgtgtgtgcaaaatCATGTCAGCAGTTAAAAGAATACGATTTGGAAGAGACCGAAGGTGAACAGTGTATTTTCTGTTCTAATAAGAAACCAccattttgcatttctgttcagCTATTGACTTGCTTTATCCAGACAACCAAAGATAAAGCTTTAACCCTAGCTAGAGATTCGGTAAGATcatcttaacttttttttttttttcttgctttttttgtgtgcatactCTGCACCACCACTGCTGAGGTTTATAGTGTAAATGTTGCTAATGACTCAATATACTTTTGTAGATGTTCTTCGACTTACGTGCATTTATATATCGCcatttttagtttatatttgaGGATTTAAAATGGCTGTGGATTTCTGAGCATGTACTGACTGATATAGTTAGTTCTGGGACAAACTGCTGTTGCATGCATTCAAAAAAGCTAACAGAAGTGAGCTGTGCAGTCGGCCTACAGTGATTGTGTGAGTTTTTTTTCAAAGAGGACAACCTGGTGGGACCAAAGTTTATGTGCCTTTAGTCTtaattttccttgcattgtaatattcagttttaatgaacctctgaaatattttgtatttcaaaaatccAGAATTTATAACAAACATGGCTCAGAATCTACGAGTGAATTCTTCAAGGACATTGATGACATGATCTCTACTGTAATCACCATCCGCTGTttaaagagaggaagagaaaaaaaaaaaaaatgaccccCCACATAGATGTACTTAGTTAAGAGAAAATAGATTCTGTGGTCTATGTTGAACAAAGTcatgtatattttctatattagTTGAGTTTTTACatctttagaaatgtaaaattcagTATAGTTTGGAATCGgcacaattaaaaattaattttctAACAAGTCGGGAGGTTTGATGGTTGTGTTAATTTCACCCTGCGTGTATCCTGCTTACCTCTGTAGCATGCTCAATAAACACTTCTGTAGCTCTATATTCACCTCTTCTGTCTCTatgctgcctctctctctcttttcttgtatttcacCTCACTATGCTTCTGAAATCATGATCTCGGTCAGGGTGGGAAAACACTGctctttaaaagcatttttttaatgtattggaaCCACAATCGGGAACCGAAGCAAAAGccggaaacaaaacaaactaaagtcTGCACGGCCAAATGTTGACCACCTCTTTCCCACCCTGTATTGTACTCTGCTGCCAAACAGAACCTACCTTCTGTGACTTTTTTAACTCTTTGTTCTGTCTCCGTAGATGTTCCTACTAATCAGTCTTTCAGGGTCTCATGCTTCTCTGCTGCGAATCCATCTTTCACCTTCTATCTGCTATAGAGGCCTTTCTACTAAATCTTCTCTCTCATAAAATGCTCATACGGTGCATTGATTGGTCTTTAGGCACCTGCAGTCGCTTTCCATGCAGGCGCATCTATTGAGCTCATCTATTGAGACGCGTCCAGAGAAAATATTACGTCTAAATACCAACCGTGTAAATTGCAGCCGCCAAATTTGTAGTTACGGATTTGCGGTTTTGCTTTGGATCCGTACGGTACACAAAAAGTATTGAGACAAAACTATTTAGAGAGGATGAGTAAcaaattgttaatttatcaCTCggttaaaatgcaattaaatgacAATTACAATGGTTTTAAGTCAGTGTATTCATACATTTCTCCTTTTTAGCAGAAGATTGTTGTATTtcaactggagaaaaaaaataataatgatgaaatgATGGCCTACcaagaaaatgcagtttttgtaacatacatttctgagccaatacaatttttttacattttatatagattttattttgttattctttatGGGGTAGTTTTACAAATTGTTATCTCTTAATTGCACAGCAAGGATTAGAAATGGGATATTTTTCTGACTGATTATAGGGAAGGTAATGTGCAGAGCCGGAAACTGCTTTATCATTTCTGTAAGATGGATCATTTATTTAGGAAGGAAGCAAaggatattttcatttaatttcatattactgtaatttattaCTTGGAAAGTGATCTGGGGAAAGgacattaaatattatgtatcAATAGAAatccagtgtttttaattttacaaaaatgaGGAGAGGGTGGTCCAAAGGTATTGTGACTGGCCAATCAGGATTGACACCCTAATCTGAATTTAATCTGTCTTTCTAGGATGAACACACATGGGAAACATTTACAAGTGtactttaataaacatttagcTTTCTATGAGAACAGTATTggaaggtttttgttttaaaagcattcctGGGGTATcagattaaatatttgcttttaacTGGAGTGCTGTGAATTATTTGCAATTCAATTTATTACGAAGGTATAAAACAAGATGTCAAATTAAGATACAGGactattacttttattattccTCACAACTTCAGAATTCATACACAATAGGAAATCATGGATTAATGATACTATTTATATTGGATGTAACAGAATCTAACATTccgtttttttaatttgtcgtAGATAGGCTTTTACAAAAGGCAACAATGTTTTCAATTAGCCAGTATTGGGTGAATTCATTCTAACTCTGTAAAAACAGTGTTTTTACACTGGGAGTTAGACATTTTTGGACTATGAGCATTTTTGAATGgttcttttcttctccttttctatcctcttttgttttcttcaactATATTCTTCCATTTTATGTGTGTGctgttactgtttatttttctccagaCAACGAATGTGTTTGCAGATGCCTACGTTTACAGTAGAGGGAAGTTTCTCACCTCTAAGTtacaatgaatgaaaatgtataaatgttgcTTTCAATATGACCgggtttaaaatgtcaaaatgtgaCCTAAAGATGGCAGTGAAATTTCTCCAAGGAAATGCCTTTCAGATAATACTTTCTCTCCCCACATATTCTGATAATGATGATCCTGATGATGCGATTCACCATCAAGCCTATAGTCTTGGCTCATATGGATTAGAATATGTACAAACTGCTTTCTTGCAGTCTTGATTAAAGCTATTACAATCTAGGTCCAGAccaatcatacattttattaagataaaacaatattcaacTTTTCAAAcctacactgaaataaataaccGTACTATATCTGTTTTGAGTGTATTCccttcaatttcaaaataacccAGGTATATAACCGAATCCTCAGAGGCTTTCCACTgccatttatataaaatagaaaAGTGAACGCACAAAGGATTTTCACCGTAGATTGGATATTTCAAATACTTCCATGATGACACTTATTGATTAACTTAAATCCATTATTGTAAACCATCGGGTAGAAATAGTTTTTATGTGTGTGGATTGTTACTACCAGAAGAAGGAGATTCAAATTGGTACACAAAAAAGATCGTCTTTGGAAGTGTTTCGACGGGGGTGGAGTTAAGAAAAGAGAATATTCTAGAGTCATTTAAATTTTGAATTAATGGGTTGAATTAATACTCGATAAAGCATTATCTTTCCTAAGAAGTGAAGCACAGTTCTATCTGGAGGGCTGTCACAaagatgacatttaaaattgaaacttCCTGTCTAACAAAAGCATGAAAAACATCCTGAGATTATCTCATTAAAGCACAAAAAACTATCAGATTTCAATTTGTTTCAGATGGGGGAAGGTGGAATAATATaagatttaatgaattaatgctGCGAAAAAGGTAATCTAAATAATTACGAATCGAGGAAATTAGTGACAGGATTCTAAAGTAAAAGTGCTAGCGCAAACAAATGTGGATTTTATTTCCGAgctgcatatttttattttaatctatcaATTAAATGATTTACGCTATTTGCTAGGTTTTGCTTAAATGGTTTTCAATCAAAATCTTCCTCTCCAATCTCAAAAGTTAAAGGCTCATCTCGAGTCAGGTGAAAGGAGCTGTTCAAACCTTTAACTcagcatttatgtatgtatgtatgtatgtatgtagttttAGACTTGGATTGTGTCCAATATTTCCTCCAGTATATctgcaaatacaattaaataaaggacACCTTTCTGCATTGACCAAAGGATGGATTTTGTATCCAAGGGCAGTTTTACATGATACAGAATCCAAAATATCTGTCACAAATTGGGTTTTTCAGACCGATTGGGGGATGTTTCCAGCCAGAACTGGGAAGCATTGGATAATTTACAATCTGTTGTCTATTACCATACCCATTGTAAAGGCCCGGTAAGGATCCAATTGACTAGACGTCATTTCCAGGTCAGGTACACTGCCTCACCCAGGGGAATATCTTGTGTGGGGAGGCAGGCTGTGAGAATTTGAAATATTGTAGAGAAAATGACTTCATACCCACCCATGCTAAACGTCTCGGCATTAAATGTTTGCATAATATTGTGTACTTCTTGCTGAttttttgcattgtgttttgaCAGATCTGTGCAAGGCAGGATGAAATATAAGACAAAACAGCGACTGTCTGGATAAAATGCATAAGATTTTCTGCTTTCATTGGCCAATTAATTACACAGTGTTTAcaatttttattgtatattttaagcaTGGAGGATTTTAATCCCTTTTCACTGTAATGATGGCATCTCCACACCTAGCAAAGACAATTAGATTGATTTAGTGTGGCAGCTTCAGAAATGTGCACCTTATTACAttgcatcttaaaataaattaaattgtgaagaTAATGTTGCCAGCTTTCgttcagaaaacaacaacaatcacttCAGTTTTGATTCTACTTGAGATCTTCCAAACCTCTTTCCAACAGCTGTAGATCATTGCAGCCATTAACAAGGATTGCGGTTTGTTCCTCCTTGAGACACGAGTCCAGATGTGTAGTTTTCAGTGTCAGTAACTGTTCACTATAGTCTTTTCATCATTTAAAAGCTGTTGAGTTCATCCTGCC

Function

symbol description
ptbp2b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system; cranial ganglion; retinal ganglion cell layer; and retinal inner nuclear layer. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).
ptbp2 Enables RNA binding activity. Involved in negative regulation of RNA splicing. Predicted to be integral component of membrane. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: polypyrimidine tract-binding protein 2 isoform X2

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005112 True 7391 mRNA 0.39 13 15792614 15814059

Neighbor

gene id symbol gene type direction distance location
AMCG00005101 NA coding downstream 355644 15418575 ~ 15436970 (-)
AMCG00005107 NA coding downstream 422626 15359973 ~ 15369988 (-)
AMCG00005106 NA coding downstream 441148 15348635 ~ 15351466 (-)
AMCG00005109 NA coding downstream 459094 15311593 ~ 15333520 (-)
AMCG00005108 NA coding downstream 487793 15285703 ~ 15304821 (-)
AMCG00005115 NA coding upstream 133469 15947528 ~ 15952291 (-)
AMCG00005113 hccs,LOC106942126,LOC106904910,LOC106519007 coding upstream 140405 15954464 ~ 15956072 (-)
AMCG00005123 NA coding upstream 229142 16043201 ~ 16045747 (-)
AMCG00005124 abcd3,LOC107739019,LOC107560648,LOC107657768 coding upstream 232420 16046479 ~ 16057475 (-)
AMCG00005133 LOC103369878 coding upstream 324409 16138468 ~ 16166800 (-)
G145441 NA non-coding downstream 525666 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 534950 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 537726 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 643022 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 687164 15105218 ~ 15105450 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 560603 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1150144 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 2210706 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 2483788 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 2537808 18351867 ~ 18352132 (-)
AMCG00005111 NA other downstream 257469 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 823372 14964414 ~ 14969242 (-)
G145046 NA other downstream 2455868 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 3444286 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 3636236 12135378 ~ 12156378 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 144645 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 1729087 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 2927825 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3199018 19013077 ~ 19024461 (-)
G146313 NA other upstream 3756000 19570059 ~ 19573318 (-)

Expression


Co-expression Network