AMCG00005113 (hccs,LOC106942126,LOC106904910,LOC106519007)


Basic Information

Item Value
gene id AMCG00005113
gene name hccs,LOC106942126,LOC106904910,LOC106519007
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15954464 ~ 15956072 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005113
ATGCACCAGGCCGCTTCCCCAGCAGAGCCAACCGGCAGCTCTCCTGGCCCGGCCCACCAGGAACGGGCTTATGACTTTGTGGAGTGCCCAATGAGGGCCTCAGCTGgaggaaacaaaacaccagaTGACATTGACCCCACAAACATGATGCCTCCTCCAAATCAGATTCCTGCTCCTGACCAGCCCTTCCCTCTGTCTGTGACCAGAGAGGAGTCCAAGATCCCCAGAGCCGGCACAGATAAGAACTGGGTTTATCCTTCTGAGCAGATGTTTTGGAATGCAATGCTGAAAAAGGGGTGGCGCTGGAAGGATGACGACCTCGCTCCTGACGATATGACAAACATCATCAGAATTCACAACCAAAATAACGAGCAGGCGTGGTACGAAATCTTAAAATGGGAAGCTCTTCATGCAAAGGAATGTCCCTGTGGCCCTGCTCTTGTCCGGTTTGGGGGGAAAGCCAAGGAATTCTCGCCAAGAGCCAGGATACGCTCCATGATGGGATACGAGCTGCCTTTCGACAGACACGATTGGATTATTAACCGCTGTGGAAAGGAAGTGAGATATGTAATTGATTACTACGACGGAGGAGAAGTTAACAAGGAAAATTACCAATTCACAATCCTCGACGTTCGCCCAGCCTTCGACTCCCTGGGCGCCGTGTGGGATCGGATGAAAGTGACTTGGTGGCGCTGGTCATCCTAG

Function

symbol description
hccs Enables heme binding activity and holocytochrome-c synthase activity. Involved in cytochrome c-heme linkage. Located in membrane and mitochondrion. Implicated in linear skin defects with multiple congenital anomalies 1 and microphthalmia.

NR:

description
PREDICTED: cytochrome c-type heme lyase isoform X3

GO: NA

KEGG:

id description
K01764 HCCS; cytochrome c heme-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005113 True 705 mRNA 0.52 5 15954464 15956072

Neighbor

gene id symbol gene type direction distance location
AMCG00005115 NA coding downstream 2173 15947528 ~ 15952291 (-)
AMCG00005112 ptbp2,ptbp2b,LOC107677766,LOC107718150,LOC107570490 coding downstream 140405 15792614 ~ 15814059 (-)
AMCG00005101 NA coding downstream 517494 15418575 ~ 15436970 (-)
AMCG00005107 NA coding downstream 584476 15359973 ~ 15369988 (-)
AMCG00005106 NA coding downstream 602998 15348635 ~ 15351466 (-)
AMCG00005123 NA coding upstream 87129 16043201 ~ 16045747 (-)
AMCG00005124 abcd3,LOC107739019,LOC107560648,LOC107657768 coding upstream 90407 16046479 ~ 16057475 (-)
AMCG00005133 LOC103369878 coding upstream 182396 16138468 ~ 16166800 (-)
AMCG00005125 olfm3 coding upstream 235097 16191169 ~ 16205201 (-)
AMCG00005128 col11a1 coding upstream 273285 16229357 ~ 16302453 (-)
G145441 NA non-coding downstream 687516 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 696800 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 699576 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 804872 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 849014 15105218 ~ 15105450 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 418590 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1008131 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 2068693 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 2341775 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 2395795 18351867 ~ 18352132 (-)
AMCG00005111 NA other downstream 419319 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 985222 14964414 ~ 14969242 (-)
G145046 NA other downstream 2617718 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 3606136 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 3798086 12135378 ~ 12156378 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 2632 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 1587074 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 2785812 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3057005 19013077 ~ 19024461 (-)
G146313 NA other upstream 3613987 19570059 ~ 19573318 (-)

Expression


Co-expression Network