AMCG00005115


Basic Information

Item Value
gene id AMCG00005115
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15947528 ~ 15952291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005115
ATGTCCGAAACTGCATTGGAAGAAATGGCAGTGTTATCCGCAATATACTGCGAAAAAGATGAATTTGAGTTGCTGGAGCAGTCGGATGCAAAGGGACTTGTATTCCAGATCCAGCTTGTAGTGGAGACACACTTGCTGAAGCTGGTCTTCCAGTTACCCCCCGAATATCCATCCTGCTCTCCTGATATCTCCGTTAGCTCTGAGCAGCTCACCAGAAAACAGTGCTCAGATATAAGGCTGAGTTTACTTAATAGAGCCTCAATTCTTATATCGCAGCCCATGGTTCACGAACTGTTACTCTGGCTGCAGCAGAATTGTACAATCGCCACTAGTGAGCAATCGGTGAGATACTGCAGCCCTGGAGGGACCTGTGAGCAGAGATGCAAAGAGGAGACCTGGACAGCTCTGTTACTGATTGATCACATGAGAGCgagaaataaatatcaaaaaacaattgaaaaatggACTTTGGAATTAGGTCTCACTGGCAGACTCTTCATGGGGAAGTTGATATTGATTCTTCTGCAGGGAGCAAAGGAAACCATTAAGGAGTACCTTCTTCTGCAGAAGACTGTAAAAGTGGATGTTGATTCAACtggaaagaaatgtaaagagAGAATGATGCGTGTCCTTTGTGAAACCCCCCTGCCCCTGGGATGCAAACAGCTTCCAGCATTTGAAGTCAAAGATTATTCATCTCTGGAGGAACTGAGAAGCGAATTTGAATTAGTTGGACTATTCGAGCTGTACCACGAGTTTGTGCACACGCTGCTT

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005115 True 774 mRNA 0.45 4 15947528 15952291

Neighbor

gene id symbol gene type direction distance location
AMCG00005112 ptbp2,ptbp2b,LOC107677766,LOC107718150,LOC107570490 coding downstream 133469 15792614 ~ 15814059 (-)
AMCG00005101 NA coding downstream 510558 15418575 ~ 15436970 (-)
AMCG00005107 NA coding downstream 577540 15359973 ~ 15369988 (-)
AMCG00005106 NA coding downstream 596062 15348635 ~ 15351466 (-)
AMCG00005109 NA coding downstream 614008 15311593 ~ 15333520 (-)
AMCG00005113 hccs,LOC106942126,LOC106904910,LOC106519007 coding upstream 2173 15954464 ~ 15956072 (-)
AMCG00005123 NA coding upstream 90910 16043201 ~ 16045747 (-)
AMCG00005124 abcd3,LOC107739019,LOC107560648,LOC107657768 coding upstream 94188 16046479 ~ 16057475 (-)
AMCG00005133 LOC103369878 coding upstream 186177 16138468 ~ 16166800 (-)
AMCG00005125 olfm3 coding upstream 238878 16191169 ~ 16205201 (-)
G145441 NA non-coding downstream 680580 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 689864 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 692640 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 797936 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 842078 15105218 ~ 15105450 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 422371 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1011912 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 2072474 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 2345556 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 2399576 18351867 ~ 18352132 (-)
AMCG00005111 NA other downstream 412383 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 978286 14964414 ~ 14969242 (-)
G145046 NA other downstream 2610782 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 3599200 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 3791150 12135378 ~ 12156378 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 6413 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 1590855 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 2789593 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3060786 19013077 ~ 19024461 (-)
G146313 NA other upstream 3617768 19570059 ~ 19573318 (-)

Expression


Co-expression Network