AMCG00005141 (vav3)


Basic Information

Item Value
gene id AMCG00005141
gene name vav3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16806243 ~ 16809658 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005141
ATGAAGGACCTGGCTCAGTATGTCAATGAAGTGAAGAGAGACAACGAAACGTTGCGAGAGATTGACCAGTTTCAGAGATCCATTGAAAACCTGAACCAGTCTCTGAAAAACTACGGAAGACCAAAAGTGGATGGCGAAGTGCGGGTAGCTTCACTAGATAAACGGGCCAAACAAGACAGGCATATCTTCTTGTTCGACAAAGCAGTGATTGTTTGCAAGCGACGGGGCGACAACTATGAAATGAAAGAGGTGATCGACCTCAACAACTTCAAAATCACCAACAACCCCAccacagacaaagaaaacagaaagtgGTCTTATGGATTCTACCTCATTCATAACCAGGGACAAAACGGATTTGAattctttttcaaaacaaaagagcTGAAGAAAAAGTGGCTTGAACAGTTTGGAATGGCGATGTGA

Function

symbol description
vav3 Enables guanyl-nucleotide exchange factor activity. Involved in several processes, including B cell receptor signaling pathway; positive regulation of B cell proliferation; and regulation of GTPase activity. Part of immunological synapse.

NR:

description
PREDICTED: guanine nucleotide exchange factor VAV3

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005141 True 426 mRNA 0.43 5 16806243 16809658

Neighbor

gene id symbol gene type direction distance location
AMCG00005140 NA coding downstream 6557 16782256 ~ 16799686 (-)
AMCG00005136 NA coding downstream 30285 16773667 ~ 16775958 (-)
AMCG00005129 LOC107757695,LOC106590636 coding downstream 488942 16312761 ~ 16317301 (-)
AMCG00005128 col11a1 coding downstream 503790 16229357 ~ 16302453 (-)
AMCG00005125 olfm3 coding downstream 601042 16191169 ~ 16205201 (-)
AMCG00005142 NA coding upstream 3487 16813145 ~ 16814654 (-)
AMCG00005143 NA coding upstream 40144 16849802 ~ 16850062 (-)
AMCG00005139 slc25a24,LOC108439838 coding upstream 53320 16862978 ~ 16875255 (-)
AMCG00005148 NA coding upstream 94242 16903900 ~ 16907830 (-)
AMCG00005152 NA coding upstream 105599 16915257 ~ 16920464 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 430826 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 1539295 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 1548579 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 1551355 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 1656651 15145798 ~ 15149592 (-)
G145760 NA non-coding upstream 154545 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 1215107 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 1488189 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 1542209 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 2274337 19083995 ~ 19086041 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 827388 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 1271098 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 1837001 14964414 ~ 14969242 (-)
G145046 NA other downstream 3469497 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 4457915 12344671 ~ 12348328 (-)
AMCG00005158 NA other upstream 733488 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 1932226 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 2203419 19013077 ~ 19024461 (-)
G146313 NA other upstream 2760401 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 2948574 19758232 ~ 19761446 (-)

Expression


Co-expression Network