AMCG00005148


Basic Information

Item Value
gene id AMCG00005148
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16903900 ~ 16907830 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005148
TGAagacattatattaaataataacgCGTGTATGTTAAGGAGGGGGGTGTCTCTAATACAATCCAGCTACATTGGGTTAAAAAAACAGAGAGGACTTTGAATATGAAGAGAAACAAGTAGGAGGGGAATCGCCACTTGCACTCCCACAATGCATCGCTTCGGCTAAGACGGAAGTGCCCATGTTGAAACTGCAAACAAGATGGCCGCTGTAGGATAGAATAACACCGCGACTCATGAAAGAAGCGGAAAAGCTCCGACGTAGTTAAGCCACATCCAATTAGATCCGAGGACACGGGTTTAAAATCGTGACTGGAGGATTGCTGTGGCAAGATGGTGTGAGGATCTACAGTGTGGGAAGTGTACCTGAATTGAAAAGCATCAATCATGGAGTCGGGGAAGTTCTGTCCTCCACTGTACCTGCAACGCTATCAGTTTGTCATAGATTTCGTTAACAAATACAATCCTAAAAAGCTGGCAGACCTGGGATGTGCCGACTGTAGTCTTTTACGGAAGCTCAAGTTTCACCGATGCATAGAGCTGCTGGCTGGCGTGGATATTGATAGTGTTGCGCTCAGAGAGAAGATGTATACTTTAGCACCGTTATCCTGTGACTACCTGCAGCCCAGTGACCGACCCTTAACCATCAAGCTTTATGAAGGATCTGTATTAGAAAAGGAATCCCACATAAAAGGGTTTGATTTGGTGACCTGTATTGAGCTGATTGAGCACCTGCAGCTCCCAGAGATTGGGAAGTTTTCGGAGGTGCTGTTTGGCTACATGTCCCCAGCCGCGGTGATTGTCAGCACTCCTAATGCAGAGTTCAATGCCTTACTGCCAGGACTCACTGGGTTTAGACACCAGGATCATAAATTTGAATGGACACAGGCAGAGTTTCAAAAGTGGGCTTTAGATGTCTGCCGTTCTCATGGCTATGCGGTGGAGTTCACTGGAGTTGGAGAGGCGCCGTTCAGCACTGAGAACAGAGGCTTCTGTACACAGATCGCAGTGTTTCATAAGACATTCGGAAGTGACAAACAGCTGGGGACAGACCCTGAGGAGGAGTTGCATGCATACAAACTAgtgTATGATGTGGAGTACCCTAGTCTCTGTGACCACAAAATCTTTCGGAATATCCTGGTTAACGAAGTGATTTACTGCGCTGGAACAATTAAGACCAGGTTACTGGAGTCCTCCGAGGACAAGGAAACCCTTCCTCATGTGTGCCTTGCTTCAATAAACACCAGTGGCAGTAAGGAACCACTTCTTATGGATATGGGGACAGACAATGAGCCCTATCTGGAGGGAAATGCCATCTACATTCCTCTGGCTAAGCTCTTGTCTTTCCCGAAGGTGCACAGACTGTGCAAGTCTCTTCTGCGTCTGAAAGAAGTTCTGTTGGAGACTTCCCAAGTTACACTGAGCAGCGATGCTGAATCTTTGCAGTTGCTGGCTGATAGTGTGGATGGCTGCGATTTGGAGGACTGGGAGGGCTGTGGGGATGCAGAGAACAATGAAACATCTGGATCCTCGGCAGCTTATGAGGAAGACTGGGATGAGGAACTTTTAAGACAATCTTTTCAATCTTAAGTAATACAAATGCTGTTTAGtctcctgtttgtgtgtgtaaatttaCATTACAGAGGTTAATGATAAATTCCTTGGACTGTTGAAAGACtattaaagcttttttctttgtaaataatttaaattccttATATTAAGCATATATATGTTCAAACAGAATATTAATATCTGTTATCAGTCAATTGCTTTGTGAGACAGTTATTGAACAAAACCTTACAAAGTATTTGTTTACAATACCTTCTCTTTATGTATACAATGGGATATTAAAAATTCAGCTGATGAAAAGCATGACTAAATGTAAATCCtggctgttgtttttgtgagtCTTACAGCTGTGCCACTGCATAATTTAGACTGCAAATTGtttttccatatatttattaGTGGTCGATATAGCTGGGGAAAAAGCTTCAATTctgtttgtgtcattttttccaaaaagaaaagtgcTTATGAACTATTTTGAAAGCCAGTGCTTGGGAATATATTTCCCTAATGTGTCAGGGCTGTTTGATATGTGAATCTGTGCtgatgttttgcatttcaatatctGAGAAGGAAGCAGCAACATACTTCCTTCCAAGATGTGGACCCATCTTAACACTTTCACAGAAGTATAGGGGATAAAATACAGAACACTACGGTGCTTCCAGGACAAACCAGGAGTCGAGGCATGAAAATAAACCAGTCTTTTTGTGGTGGAGGTTAAAGCATGAAGAACAGTCCCAGTGTTAATGAGAAGGGGATCCATATTTTTATAGAAACATGTATTGCTTTTAATCGTTTAAACTCAAAGAATCTgctttagattttatttttt

Function

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0048599 oocyte development biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0043186 P granule cellular_component
GO:0008171 O-methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
K20798 HENMT1; small RNA 2'-O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005148 True 2404 mRNA 0.42 7 16903900 16907830

Neighbor

gene id symbol gene type direction distance location
AMCG00005139 slc25a24,LOC108439838 coding downstream 28645 16862978 ~ 16875255 (-)
AMCG00005143 NA coding downstream 53838 16849802 ~ 16850062 (-)
AMCG00005142 NA coding downstream 89246 16813145 ~ 16814654 (-)
AMCG00005141 vav3 coding downstream 94242 16806243 ~ 16809658 (-)
AMCG00005140 NA coding downstream 104214 16782256 ~ 16799686 (-)
AMCG00005152 NA coding upstream 7427 16915257 ~ 16920464 (-)
AMCG00005151 NA coding upstream 12639 16920469 ~ 16944176 (-)
AMCG00005150 NA coding upstream 47045 16954875 ~ 16960869 (-)
AMCG00005149 NA coding upstream 67753 16975583 ~ 16980358 (-)
AMCG00005165 NA coding upstream 97480 17005310 ~ 17033426 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 528483 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 1636952 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 1646236 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 1649012 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 1754308 15145798 ~ 15149592 (-)
G145760 NA non-coding upstream 56373 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 1116935 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 1390017 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 1444037 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 2176165 19083995 ~ 19086041 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 925045 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 1368755 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 1934658 14964414 ~ 14969242 (-)
G145046 NA other downstream 3567154 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 4555572 12344671 ~ 12348328 (-)
AMCG00005158 NA other upstream 635316 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 1834054 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 2105247 19013077 ~ 19024461 (-)
G146313 NA other upstream 2662229 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 2850402 19758232 ~ 19761446 (-)

Expression


Co-expression Network