AMCG00005150


Basic Information

Item Value
gene id AMCG00005150
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16954875 ~ 16960869 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005150
CTGCACTTGGGTATTTCAGCTAACTGAACAAAAGAACTGTAGTGTgttataaacagaaaaaaagaaaaactaaaagctgTGATTGTCAAATTGAAAACTTAGATTTAAACCAGAAACAGCAGCGTTACCCCAAGGCAGCTCTGAGGTTTTTGGGGGGTCATAAAAAGAAGATGACGAAAATGGGAACTAACAGCTTATCACCTTTTAAactaattgttttcttaagcATGTGCATGTCTCAGatttCTGAAGCTCAGAGAGggatgtctgtgtctgtgtttacgGTAACATCCAAAAGTATTGTGGTGCGCTGGACTCAGGTTCCTGGTGTCCACTCATACAAGGTCACGGCTACTCCTAAGAACGCCCAAGTAACGCCAGTCTTCTCCCAGTTCAACGGAGCTATAACGATTGGGTCTGTTATTTACCTAATCCCGGATACAATCTACAATATGAAGGTAGAGGCTATAGATAGTAATGGCCTTGTCCTGGCACAAGCTGAAGTACTCGAAACCACAGCCCCTGATGTACCCAGCATTGACCAGGCGTACTCAAAACTGAGCAACAGCATCACCGTGGAGTGGAATCCGGTTCCCGGGGCCAGTGCTTACACTCTGAGAGCCGAGGACGGGATATCAGTCATTGAAACGTCAGTCACAGGCTCCCCAGGAACAGTGAGCAACCTAAAGCCTGCAACCCAGTACATCATCAGTGTCATGTCTGTCAACGCAGGAGGGAGAAGCCAGCCGTCTGTGCCCAAGAAAGCAAAGACAGTCCTTTCGGCACCGATACTTCATTCCAGCTCCCCCAGCAATTCCAGCATCGTTGTGACCTGGGAGCCAGTCTACATGGCTGTAGGTTACACATTCTCCATCATACAGACAAAAACAGGTCAACGGGTCAATGTGAACACCAGCCAGACCAACATCACTTTCACAAATCTCGAACCCGGGACAATCTATTCTATCAAAGGCAATGCCTGGGATTCCAGTAACACGCTGGGGGACGACTACACAATCAGCCAGATCACACGACCAGAAATCCCACAGAATGTACAAGTCTCCCTGAACGGCCGCTCCGTGGGGGCCATGGTCACCTGGACGTCTGTGGAAGGAGCGGATAACTTCACTGCTGCCAACTGGAATGGGCAGAACTGCTCCTActccttcccctcccccccctcctccacagTCAACATCTCCTGTGACATCACCCCACTGCTGTGCGGCCAGCAATATTCGATCACGGTGGTCGCCAGAAACAGAGCAGGCCCAAGCCAGCCCTCTGCTCCCGAGAAGTTTTTGACTTTTCCTTGTGCTCCAGAAAACATTACCATAGAGGAGCCTAACCCTGGGAATCTCACAGTGTCCTGGATTCGGGTAACCTATGCAGAATACTACGTGGCATTTGTGAAGAGTGACGATGGGATTGAAGAACAGTGCAACACCACGCAGACCAGGTGTGAATTCCACTGTCTGTGTGGCTTCACATACTTCGTCAGCGTCTTTGCTTATAACAGCGCCGGACAGAGTCCCATTGGAAACGTTTTGAACTACACTACTGCGCCGTGTTGTCCAGGGGATGTGATGCCAGCGTTTGTGTCTGGCGACACCCTGGAGATCACGTGGTCACCCGTCCGTGGTGCCGAGGTGTACCAGACGAAAGCTGCAGACGGGACCAGTCAGATCCACTGCAACGACACGGCCACCGTCTGTGCCCTGTCGGCCCTGCAGTGCAACACCAGATTCAGTCTGGTTGTCACATCTTGCAATGAGGTCCGGGGCTGCAATACCTCGTGTAAAACACATTACGCAGAGACAGCTCCCTGTTCCCCTGAGATACTGAGCATTGCTCAGGCCAGTGCGTCCAGTTTTAACATTTCATGGAGTACAAACAATAAAGAGGCAAATTACACCGTGAGAGCACTTGGCATGGCAGAGTCCCACACCTGTAGAACATCTGGAAGATCCTGTCAGATCACGGGACTGCCCTGTGGTTCCACCTATGATGTCAGCGCCATTGCCATCACATCTGTGGGACAGAGCCTGCCGAGCTACACCCGACCACTGGAGACAGGTCCCTGCTGCCCTAACAATCTGACGGTAACGCAGGCCACACAGGCTATGACCAATGTCACCTGGTCCACGGCAAAGGGAGCTCAGTCTTATATCACAATGCTGAAGTCGCCTCGAGGAGAGGCCAAGTGTCACACGCTGCAGACGCACTGCCTGCTGGGATGTATTACCTGTGGTACTAACTATACAGTGTCCCTGCAGGCCATCAGTGGCACCGGTCACATGTCAGAATGCACTTTCCACGGATTCTCCTCCAGTGCCTGCTGCCCCTCGAATGTCAGGCTCTACAGAATGTCCAACAACACGATTAGAGTATACTGGCGCTCCTCGGGCAATCTCCACAACTACACTGCTGACCTCTACGGGACGAGTGCCAACTACACCTGCACCCCCCCCCAGGGCCTCAGCTCCTGTGACATCTCTGAGATCTCGTGTGGGGATGTCTACTCTGTGGTGGTGGCCCCAGTTTCAATGGATGGATCAAAAGTCAAATTCTGTCcaaggaaaatgtattctgGTAAATAG

Function

GO: NA

KEGG:

id description
K24487 FNDC7; fibronectin type III domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005150 True 2600 mRNA 0.51 11 16954875 16960869

Neighbor

gene id symbol gene type direction distance location
AMCG00005151 NA coding downstream 10699 16920469 ~ 16944176 (-)
AMCG00005152 NA coding downstream 34411 16915257 ~ 16920464 (-)
AMCG00005148 NA coding downstream 47045 16903900 ~ 16907830 (-)
AMCG00005139 slc25a24,LOC108439838 coding downstream 79620 16862978 ~ 16875255 (-)
AMCG00005143 NA coding downstream 104813 16849802 ~ 16850062 (-)
AMCG00005149 NA coding upstream 14714 16975583 ~ 16980358 (-)
AMCG00005165 NA coding upstream 44441 17005310 ~ 17033426 (-)
AMCG00005164 wdr47,LOC102290984 coding upstream 87176 17048045 ~ 17062557 (-)
AMCG00005163 NA coding upstream 103730 17064599 ~ 17087674 (-)
AMCG00005162 camsap2,LOC105906931,LOC107679834 coding upstream 140658 17101527 ~ 17109305 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 579458 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 1687927 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 1697211 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 1699987 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 1805283 15145798 ~ 15149592 (-)
G145760 NA non-coding upstream 3334 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 1063896 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 1336978 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 1390998 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 2123126 19083995 ~ 19086041 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 976020 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 1419730 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 1985633 14964414 ~ 14969242 (-)
G145046 NA other downstream 3618129 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 4606547 12344671 ~ 12348328 (-)
AMCG00005158 NA other upstream 582277 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 1781015 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 2052208 19013077 ~ 19024461 (-)
G146313 NA other upstream 2609190 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 2797363 19758232 ~ 19761446 (-)

Expression


Co-expression Network