AMCG00005158


Basic Information

Item Value
gene id AMCG00005158
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17543146 ~ 17546332 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005158
ATACAGCCTACATGCATTGCACAGCAAACGTGCATACGTGATGTTAAAATCAATGAGACCAATCGTCTGCCAATACAGCAGCATGCATGCATTAGTGTGCAAATCTTTCAATATGACATCACTGCGTGCATCTGCCCGACACTGCAGCACGAAGAAGTGTTCAGAAGAACCAGCACCAGAAAGCGGTTCTCGGAGAAATGAGGGCAGCGACACAAATGCAGCTGTCAGCAGCGGCGGACGTCTTTCGGAAACATCTTTACCAGACACCGAGGAGAGGATCGCAAGAGCGCACCAGCAGGCCTGCGAGGCAAGCCAACAAACATATATAGACCCTGTTACCGGCTATGTGGTATTTACCAAATACGCTCATCTTCAGAGAGGGAAGTGTTGTGGCAGTGCCTGCAGACATTGTCCATATGGCCAAGTCAACGTCAAGGACCCAgttcaaaggaaaacatttaattctgtattttatgtgtagTAGTTAAGCTATGTAATTTTCGAAAGAAGAAACTCCAGAATATATCCCATCAGTACTAGACATTATAAAACTGTAAGCTAGTGTATATTGTGCTCCTgctgttttgaaaaatgcagtttcaatatcaaatgtattactCACGTGTATTGTAAACTGACAGATTTATTGTATAATCATATATTTTCTTAGTACAAGTGCTTTGCAAAAAAGAAGTTTACaatcttgaaaaaataaaaagacatgtATTCCAAAA
>TU183496
ACACAACTACACTGCAGTCACACAGGACTGGAAGTTTGTCCGGGAGTTAGACGGGAAACTAAATAAGTGATTCAAAAAGAGGTGTGATTGCATTAGTTACTAGCTATGGATTTCTAAATAGTTAAAATGTAACTGGACGATACAAGCATTGTAGGGTGCTGTGCATGCATATAACCGGGGACATACAGCCTACATGCATTGCACAGCAAACGTGCATACGTGATGTTAAAATCAATGAGACCAATCGTCTGCCAATACAGCAGCATGCATGCATTAGTGTGCAAATCTTTCAATATGACATCACTGCGTGCATCTGCCCGACACTGCAGCACGAAGAAGTGTTCAGAAGAACCAGCACCAGAAAGCGGTTCTCGGAGAAATGAGGGCAGCGACACAAATGCAGCTGTCAGCAGCGGCGGACGTCTTTCGGAAACATCTTTACCAGACACCGAGGAGAGGATCGCAAGAGCGCACCAGCAGGCCTGCGAGGTACGAGGCGCTTCCGCGTTGTGTCACCGTGTTTAGGGGACGGGCGGAGCCTGCAGCCCGGCACACTGGGGCCGGTGCGCGGCACAGCACCACTGAAGCGCAGGCTCTCTCTTCTGTTCATGTGCTTTATGAAGTGATTACTGATCAAATATAGTAGTCAAActgattttcaaaaataatgattgaCATTGTGGTTCTGATGTTAGTTAAACACActttattgatgcatttatgtattttaattgtaatgcatgACACTACCGCTGCGGTTCCACAGATGAATACACCACCTCAATCCACGCAGGGCAAGCCAACAAACATATATAGACCCTGTTACCGGCTATGTGGTATTTACCAAATACGCTCATCTTCAGAGAGGGAAGTGTTGTGGCAGTGCCTGCAGACATTGTCCATATGGCCAAGTCAACGTCAAGGACCCAgttcaaaggaaaacatttaattctgtattttatgtgtagTAGTTAAGCTATGTAATTTTCGAAAGAAGAAACTCCAGAATATATCCCATCAGTACTAGACATTATAAAACTGTAAGCTAGTGTATATTGTGCTCCTgctgttttgaaaaatgcagtttcaatatcaaatgtattactCACGTGTATTGTAAACTGACAGATTTATTGTATAATCATATATTTTCTTAGTACAAGTGCTTTGCAAAAAAGAAGTTTACaatcttgaaaaaataaaa

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005158 False 734 mRNA 0.41 3 17543146 17546150
TU183496 True 1204 lncRNA 0.43 3 17543163 17546332

Neighbor

gene id symbol gene type direction distance location
AMCG00005157 lhx9,LOC107674936,LOC107556179,LOC107699434,LOC107586419,LOC107741549,LOC107712183 coding downstream 12659 17522613 ~ 17530487 (-)
AMCG00005159 nek7 coding downstream 51760 17474522 ~ 17491386 (-)
AMCG00005156 NA coding downstream 109491 17401569 ~ 17433655 (-)
AMCG00005153 nr5a2,LOC106613481 coding downstream 264592 17261914 ~ 17278554 (-)
AMCG00005154 nr5a2,rtftz-f1,LOC106613481,LOC106574163 coding downstream 301427 17224757 ~ 17241719 (-)
AMCG00005168 NA coding upstream 90364 17636696 ~ 17666606 (-)
AMCG00005176 NA coding upstream 147851 17694183 ~ 17699719 (-)
AMCG00005175 NA coding upstream 161386 17707718 ~ 17735224 (-)
AMCG00005177 NA coding upstream 188976 17735308 ~ 17744787 (-)
AMCG00005174 NA coding upstream 215088 17761420 ~ 17775426 (-)
G145760 NA non-coding downstream 578072 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 1167729 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 2276198 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 2285482 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 2288258 15253513 ~ 15254888 (-)
G145995 NA non-coding upstream 478433 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 751515 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 805535 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 1537663 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 1672059 19218391 ~ 19219758 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 1564291 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 2008001 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 2573904 14964414 ~ 14969242 (-)
G145046 NA other downstream 4206400 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 5194818 12344671 ~ 12348328 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 1195552 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 1466745 19013077 ~ 19024461 (-)
G146313 NA other upstream 2023727 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 2211900 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 2452835 19999167 ~ 20023507 (-)

Expression


Co-expression Network