AMCG00005174


Basic Information

Item Value
gene id AMCG00005174
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17761420 ~ 17775426 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005174
gtgaAATTTGGATTTATTCTTACATTATGGATCGCCATTTTTTCTGCAGTTAAAACAGATTCAgACTGTGAGAGAAAGTTCCTCCCTGAAAAGGAGAATGCTTTCATAGTTGATGACGACAGCAAAGCTACATACAGCAGTGGTGAAACTGTGAAGTATACATGTCAAACTGGTTATATTTCCAGAGGAACAATTTCATTCAGATGTGAAAGAGGGACGTGGAGGGAAACGGCACCAAAATCATGTCGGCcaaaGCCTTGTGGCCATCCTGGAGATCTAGAAAATGGCTATTTACAGCTTGAAAGTGGACAGGAGTTTGTGTTTGGATCCACAGTCAAATATTTTTGCAATGAAGGATACCAAATGGCGAGTCGGATTACTTTCCGCAACTGCAGAGAGAAGGGATGGGACAATGATATTCCTCACTGTGAACCTGTGATGTGCATTCCTGAAGAAGTAACAGCTGGTTTAAGGTCAAGTAGAGGAAATGAGCCCGTCCCCTATGGAAGTGTGATTCGGTTTGAGTGCATCACCCCTGAGCATAAGCTCGAAGGCGCAGAAGAAATATTTTGTGATGCTGCAGGTCATTGGAGTGCATCTAACCCAAAATGTGTAGaaatagcATGTGGTGCTCCTGAAATATCAAATGGCAACATCCAAGACAGAAAGGAGATTTACAAGAATCACGAGACCCTGAGATTTAACTGTGATAACGGTTTTAAACCAGCTGAAAGAGGAATGCCAAAGTGTACAAAACAAGGCTGGAGTCCAGAGCCAAGATGTGAAGAGGTAACATGTAAAAAACCATCTACAGAAGATTTTGGATATTCtagcaaaaacatatatatagttGGAGAAAGAGCCACCTTATCGTGTCCTCTTGGACTTAGAACTGTAACTAATGAGCAAAGCACTACTCTCACCTGCACAGAAAACTGGACTATGAATGAAGGCTGGTCAATCAGCCCTTATTGTGAACaaattcaTTGTGATCTTCCTGTTGGTGAGGGATTATCCGTCTATAGGCGTTGGTCTTATCCAATTAACAGATATCGACACGGGGATACAATAACATATAATTGCTTAAATGGATACGAACCACGAGGGCAACGACAGTCAACATGTAGACTTAGTGGATGGGAGCCAAAACCGATTTGCAGTGAAATAACCTGTGATCCTCCAGATATTGCAAACGGCAAAATATTATAtccaaaaaatatttacaagttGAATGAGCGTCTTCGTTATAAATGTGGCAGTGGATTTCATGCAGTTTCAACTGAGGTTCTGTGTGGAGAAGATGGATGGGACACACTTCCTTCTTGCAGAGTTCAAGAAGGGATGTGTAAGAAACCTGATCTACGTAATGGATTTTGTACACCAAAGCGGGAGGTTTATGGCCAAAGAGAAACTGTATATTATGCTTGTATTCCTGGATATAAACCTGTAACAGAAGGATGGTGGGGAACACTACAATGTTCCAATGGCGCGTGGTCCGAGACTCCAGAATGCATTTttgtgtcactgttcCAACAATCCCGAATGCAAGTGCTGAACTGCAaagttcaaatatattttcccacgaagaaacagtaaaatataacTGTGACTCGCTGTATGAATTTGAAGGTACAGatgttgcaaaatgtattaatggagAATGGGTCCAGTTGCCAAAATGCATTCTAAAGGGAGGAACATGTGGCGTTCCCCCTCATGTAGAACATGCAGTAATTACATCACCGTTTCAGACACATTATCCTTGGAATGCAGTTGTGTCATACAGTTGTGAAGGGTCATATAAAATGGTTGGAAGTGAACACATTTGCTGCAGTGACAGAGGTTGGAGTGATAGTCCGAAATGCCAAAaaaTGTCCTGTGACCCTCCAAGGAATATCACAAATGCATCATTTTCAGAAAAGAATGTGGACAGAGAATTTTCACATGGAGAGACTGTGGAATATGTCTGTAGAGattattttaggttttcaaATGAATCCTCCTCAGCTTTGTGTGTAAAAGGAACTTGGCAATATCCCACCTGTGTTCAACAGGATTACTGTGATCCCCCACCTAAGCCGGCAGGGGGATATGTATCACCTGCAGAAGAGAGATACCACAATCACGATGAGGTTACCTATCATTGTAATGACACGTATGAATTACATGGAAACAGTACAGTAGTTTGCAGCCATGGGGAATGGACCGCAGTACCAGAGTGTGTGTACAGGGATGAGAATAAGGATGCAGAGACGCTACACTGAAGAccaacaatacaatacatatattccgctgttcttgattttgttcttgttttgcaaATAAAGAGGTCA

Function

GO: NA

KEGG:

id description
K04004 CFH, HF1; complement factor H

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005174 True 2333 mRNA 0.41 15 17761420 17775426

Neighbor

gene id symbol gene type direction distance location
AMCG00005177 NA coding downstream 16633 17735308 ~ 17744787 (-)
AMCG00005175 NA coding downstream 26196 17707718 ~ 17735224 (-)
AMCG00005176 NA coding downstream 61701 17694183 ~ 17699719 (-)
AMCG00005168 NA coding downstream 94814 17636696 ~ 17666606 (-)
AMCG00005157 lhx9,LOC107674936,LOC107556179,LOC107699434,LOC107586419,LOC107741549,LOC107712183 coding downstream 230933 17522613 ~ 17530487 (-)
AMCG00005170 cdc73 coding upstream 196928 17972354 ~ 17975649 (-)
AMCG00005171 NA coding upstream 206913 17982339 ~ 17983368 (-)
AMCG00005185 cdc73,LOC101483205,LOC105941386,LOC106633477 coding upstream 236102 18011528 ~ 18022231 (-)
AMCG00005184 NA coding upstream 252817 18028243 ~ 18036344 (-)
AMCG00005183 NA coding upstream 271265 18046691 ~ 18049244 (-)
G145760 NA non-coding downstream 796346 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 1386003 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 2494472 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 2503756 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 2506532 15253513 ~ 15254888 (-)
G145995 NA non-coding upstream 249339 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 522421 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 576441 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 1308569 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 1442965 19218391 ~ 19219758 (-)
AMCG00005158 NA other downstream 215088 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 1782565 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 2226275 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 2792178 14964414 ~ 14969242 (-)
G145046 NA other downstream 4424674 13336209 ~ 13336746 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 966458 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 1237651 19013077 ~ 19024461 (-)
G146313 NA other upstream 1794633 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 1982806 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 2223741 19999167 ~ 20023507 (-)

Expression


Co-expression Network