AMCG00005176


Basic Information

Item Value
gene id AMCG00005176
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17694183 ~ 17699719 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005176
AGGAAAGTTATGTGGACATCCTGGGGACACATTAAATGGTcagtttaatttagaacaagggaaagACTTTGTGTTTGGAGCAGAAGTGAAATATGACTGCAATGAAGGTGGTGAAGTGCATGCCTGAACAAACAGGAGATAATATCATTGTTACTGGGATGCCAGAAAATGTTGATCATCTTCCATATGGAAGTGCTTTGCAGTTTGAATGCACCTCCTCAAATCATCATAAACTGAAGGGCAACTCAGAAATCTATTGCACATCAAATGGGACATGGAGCAGCCCGTTTCCTACATGTGAGGgACTCATCTATGTGTGTGGATCAGCACCAAGAGTTGAAGGTGCAATTATTGTAACAAGGCCACAGGACAGCTACAGTGATGGTGAAAGCATTCAATATGCATGCACAAGACATTATGTACTTGAAGGACAAGCAGTTGTTAGATGTaGCCGTGTGTTGTGACAGCGGAAGAAATGCTGAAAAGAAATATTCGATTTAGGTGGCCAAAACCGACCACCAACCTACCAATGTACGTTCCACATAAAGACTAttgtgaatttgtgtgtgttcgAGGTACAAACACAAGAGATCGTCTTAGATTACAGTGTAAAGACAGTTATTTTAATACCCCTACTtgtaaaggggggggggggggagaaagtgGGGCATCACAATAATGACCTAATTCAATAGTAGGAAGATGATTCAATTTGAACTAGTTTGGAAGGTCATCAGGTGTTGTGGTTCAAACCAAACAACAACCATGTTTGTACAAATTTCACCTGCAATCATCTACAGCCAATCAACATATGaagttatatacattttaccaCTATTTGGCACCAACTGTTCAAATTTCTGCATTCGTGATACTAAGACTTTCATAAACTTTCCATGATCAAAATGCATGAAGCTTTGCAAATCGAACAACCATgcttattaatataaaaataaatcatacatctGCTCACCAAAAAATATCCTGTATGCatcttcacaaacacacacatcccgGAAAGGAAGTCAATGCAGATTCAATTCTGGgtcattaattatttgaacaaaaaattaagagatcactTG

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005176 True 1085 mRNA 0.39 4 17694183 17699719

Neighbor

gene id symbol gene type direction distance location
AMCG00005168 NA coding downstream 27577 17636696 ~ 17666606 (-)
AMCG00005157 lhx9,LOC107674936,LOC107556179,LOC107699434,LOC107586419,LOC107741549,LOC107712183 coding downstream 163696 17522613 ~ 17530487 (-)
AMCG00005159 nek7 coding downstream 202797 17474522 ~ 17491386 (-)
AMCG00005156 NA coding downstream 260528 17401569 ~ 17433655 (-)
AMCG00005153 nr5a2,LOC106613481 coding downstream 415629 17261914 ~ 17278554 (-)
AMCG00005175 NA coding upstream 7999 17707718 ~ 17735224 (-)
AMCG00005177 NA coding upstream 35589 17735308 ~ 17744787 (-)
AMCG00005174 NA coding upstream 61701 17761420 ~ 17775426 (-)
AMCG00005170 cdc73 coding upstream 272635 17972354 ~ 17975649 (-)
AMCG00005171 NA coding upstream 282620 17982339 ~ 17983368 (-)
G145760 NA non-coding downstream 729109 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 1318766 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 2427235 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 2436519 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 2439295 15253513 ~ 15254888 (-)
G145995 NA non-coding upstream 325046 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 598128 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 652148 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 1384276 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 1518672 19218391 ~ 19219758 (-)
AMCG00005158 NA other downstream 147851 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 1715328 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 2159038 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 2724941 14964414 ~ 14969242 (-)
G145046 NA other downstream 4357437 13336209 ~ 13336746 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 1042165 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 1313358 19013077 ~ 19024461 (-)
G146313 NA other upstream 1870340 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 2058513 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 2299448 19999167 ~ 20023507 (-)

Expression


Co-expression Network