AMCG00005192 (rgs5a,LOC107732440,LOC108441543,LOC107083032,LOC107564083)


Basic Information

Item Value
gene id AMCG00005192
gene name rgs5a,LOC107732440,LOC108441543,LOC107083032,LOC107564083
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18526096 ~ 18536227 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005192
CAGACATACCCTGTACCTCGAGAGTGAAAGCTTGAGAAAATGTGCAAAGGATTATCGGCATTGCCCCAGACATGCCTGGAGAGAGCTAAAGAGATCAAGACTAAGTTAGGAACTCTGCTCCAAAAGCCAGAGAATGCCATCGACCTTATCATACCCTACCCCGAAAAGCCggagaagaaaacagaaaagcttcAGAAGCCGTCCGCCGAGGAAGCCCTGCAGTGGCGCGAGTCCCTGGATAAAGTCCTGTACAACAGCTATGGTCTGGCCACTTTCAGAAGCTTCCTGAGATCCGAGTTCAGTGAGGAAAACATTGAGTTTTGGGTGGCCTGTGAGGACTTCAAGAAGACCAAGTCTCCTGCTAAGAAGGCCATCAAAGCTAAGAGGATCTATGAGGAATTCATTCAGACCGAAGCTCCTAAAGAGGTGAACATCGATCACTTCACCAAGGAAGTGACTCTGAGGAACCTCGTGCAGCTCTCGCCTGCCACCTTTGAACTGGCCCAGAAGCGGATCCACGCCCTGATGGAGAAGGACTCATTCGGCAGGTTCTTGCGCTCAGAACAATATCAGGAACTGATAAAGTAGCCACGTGGCTGGGCTGTGCAAAGCGTTCTGGTTGCTAATAAGTCATCTCTGCGTTTTAGTAAACCAGCTCACTACCTTTAATTTTAACTAAATTCTGGTCTAAATCAAGTGGTTTTAATTGATATCCTTCCCGGTGATAATGAATATAATTGAATGGGCTCAGCACTGTGTGCCTTTGTCAGCCTATAAAGCCCAAGAAAAACGATTTCCCGGCTGACATGAAAAcctaacatttaaatcacataaaaCCATCTTGATCACTaaacttaatgtaaaataatttacttatttctgcattttgtcTCCAGACAGGGATATTAAAAGAGTAATTGTAGTACTTTCTGTttcaacaaacagaaacaattgACATCCAGTATTAGCTTTATTTTTGTCCTTCCAAAATGTCTTTGCACAGCTGTAAAAGTGCCACATGTGAACTGCATAGCAACCAGTGCAGTCGTTTTCCATCTTCATTAAAGCAAAATCTTTTGTCCCTTTTTATGTATGCAATGCAGTGAGTAAACTCTGTCTGTATTAAGTGCCAACTCTGTATTTCTCTATTATCCCCATTTGAAGTTGATGATAtactaaaaaagtaaaaagccaTGAAAAactttcaattattcaattagtCTTGTTTTGCTATTAGAATCAAGGAACACCCCCTGACTGTTCTAGATTCTCTGTTCATCaatgtttctgcattttaaatttgtctCTCCTGGAGTCTCAATAAAAAGTAACTGCAGCATCTGTTACAAAGCACATTCCAATGTATAATATTTCCAAAAAGGCCAAAAAGGTTCATGTGAGAGTCATTGTGTAGGCTGACCTTCTGAAGAATGCTAGTGACCAGAATACTGAGAAACTTAGAGAGTCTTCAGGAAGTCCaacaataaacagacaaatcTTCCATTACGACAACTTCAATTAAGAGTAACCCTCTCTGTCGTGCGCGATGTTCCTGGGAACATTGCAGGCTTTCAGTAAGACTTGGTTAAGTAGTAGTTCTGATAAATTTACCACGAACAGTAGGTTGCCACGATGGAAATAAACAACTGGAGTGGAACTCAATCAGAAGTGTAAAAGTTTAGTGTAATCAGAAGGAAGGTTTATTCTGAGAAGGATAAACATCAACTGGTTCAGTCCAGGTTGAGCTATGATTATCTCACTGCCTTCCTACAATTAGAGAGGAAATTGACTggtaaataagtacataaatggttaattaaataaataaaaccatctaTTAATTATATCACATTGCTAATCAGCGAAGACTTGTACTCATTATAAAGTCGTTGATTGCTTAATGATTAcgcaataattaaacattttctcaaaTGAAGCTTCAgatttaaagttattatttgtCAAGCAATGATTCATCCAAACacagtacaaaattaaataaattcaaatacaaatatatatatatttttaaagtacaatACAATCCAAAATCTAcattcaatacaatatatattctgttattttcagTACAGTACCAAACATTCATGTACGTGTCTGTTAACCTACACTTTTGTATTAGACATAATCAgttatgcatgtttttaattaacactcTGTTGTTATTATCACActtcaattatataaaaaaaacattctctatTAATAGATTTAGTACTGCATTCAATAAAGTCCTTATTGcttaacacaataaaacacaaattaattaatcctGCAGGACAGAACTTAGATTTGTACAATATTGACATAATTTATACAATCAAGGTAAACCCTCTCAAAgttcagctgtgtgtttttttggttgttgtttattatactaaacctcaaagaaaaaaaaaaactaattttgttgTCAACTTTtgatagagaaaaaaaaaaggagttaaacataagaacatattaCCAGCattgtaaaagtaaaacaataatagtaattgaATGTACTGCTAATTTAGTTTTGATTGAGATTGTGAAGTGAATAAGGACTTATTGAGTCAGTgctataagaaatatatatttgacctcgtatatgcatgtatgttttgtagtcaacaatataaaaatgcattaatacattaaattcttcaagatgtatttattcttcatGTAAATGTTTATCGTTTGCAATGAGTTGTTTAAGTTATTCAGTCGATGCCACACTGGAATGAATGTTTCTCAGGATACAGGAGCTCAGGAGCATGTGGGCGCACTTGAGCTTACATAAAAAGAAActgttgtcatttt

Function

symbol description
rgs5a Is expressed in bulbus arteriosus; cranial blood vessel; eye; and trunk vasculature. Human ortholog(s) of this gene implicated in essential hypertension. Orthologous to human RGS5 (regulator of G protein signaling 5).

NR:

description
regulator of G-protein signaling 5

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005192 True 2823 mRNA 0.36 5 18526096 18536227

Neighbor

gene id symbol gene type direction distance location
AMCG00005191 NA coding upstream 18380 18504886 ~ 18507716 (+)
AMCG00005190 NA coding upstream 45176 18473181 ~ 18480920 (+)
AMCG00005189 LOC107711117,LOC108441513 coding upstream 107515 18401193 ~ 18418581 (+)
AMCG00005180 brinp3a.2,LOC105906059,LOC106560299,LOC107711116,LOC107732449,LOC108440126,LOC105024861,LOC107667973 coding upstream 304548 18202351 ~ 18221548 (+)
AMCG00005181 uchl5 coding upstream 484266 18036473 ~ 18041830 (+)
AMCG00005194 nos1ap,LOC107692421,LOC107711121,LOC107551033 coding downstream 94187 18630414 ~ 18635052 (+)
AMCG00005195 nos1ap,LOC107711121,LOC107551033,LOC107692421,LOC108271954 coding downstream 109218 18645445 ~ 18664265 (+)
AMCG00005206 uap1,LOC106584139 coding downstream 147981 18684208 ~ 18695706 (+)
AMCG00005205 ddr2,ddr2a,LOC106584138,LOC106560289 coding downstream 177178 18713405 ~ 18726215 (+)
AMCG00005204 NA coding downstream 192478 18728705 ~ 18733928 (+)
G146021 NA non-coding upstream 227993 18297874 ~ 18298103 (+)
G145975 NA non-coding upstream 454321 18020892 ~ 18071775 (+)
G145960 NA non-coding upstream 666461 17859136 ~ 17859635 (+)
G145925 NA non-coding upstream 763637 17729788 ~ 17762459 (+)
G146043 NA non-coding downstream 5029 18541256 ~ 18542840 (+)
G146088 NA non-coding downstream 219848 18756075 ~ 18756595 (+)
G146090 NA non-coding downstream 221440 18757667 ~ 18757871 (+)
G146091 NA non-coding downstream 227816 18764043 ~ 18764298 (+)
G146140 NA non-coding downstream 356840 18893067 ~ 18896727 (+)
G145932 NA other upstream 754571 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 3141285 15379599 ~ 15384811 (+)
AMCG00005060 LOC106599426 other upstream 4337767 14155155 ~ 14188329 (+)
G144940 NA other upstream 5744926 12780580 ~ 12781170 (+)
G144677 NA other upstream 6862728 11662681 ~ 11663368 (+)
AMCG00005199 wdr78 other downstream 278802 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 938912 19475139 ~ 19530453 (+)
G146305 NA other downstream 1043346 19579573 ~ 19579807 (+)
G146519 NA other downstream 1646127 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 1716782 20253009 ~ 20279786 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location