AMCG00005200 (tctex1d1)


Basic Information

Item Value
gene id AMCG00005200
gene name tctex1d1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18826986 ~ 18830395 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005200
CGACAAGCATCACATGTGTAGTGTGAGAACTGTATGTGACGTTAGTGGCTAACCGAACGGAATAATAGtagaagtaataataaaacaataagaaaatatcTTGCAAAGGGAAAAATACTTGGCACACGTATTTGAAAGCGAGGGGCTGTTTTCTAATGGTTGCCTTGTGAGCTATACAAAAAACGTGATCTTGTTTTGTATCGTTTACAGTGCCAGTGATCGAGAGTGTCTCTGGTCGCATTCAGCTGCAGATTCCCGTTCTTTCTTCCTGCATTGCTAACCGTGCTGTCTGTACAAACTGCATCCGTCCATCGCAGACGCACGGATCCGCCAATGGCAGCGCCGGGATTGTGCACATGTGCGCAGGTCTGCGGACGCACTGCAAGCTGGCACTGCGCCTGCGCCCGTGTTGACGGCAACACACAGGTTGGCAGGCCAACCGACGCGCCGCTGCGGGCTGTTTGCGGTGCAACTCGGAGCGGAGAGACCCGCACACCTGCGCCCCTCGGAGCGGAGAGACCCGCACACCTGCGACACACCTGCGCCCCTCGGAGCGGTAAGACCCGCAAACCTGCGCTCGTACTGTGCGCACCTCGGACAGGTCCAGCGATGTCAGACGTGGCGAAAGACAAAGCCGCTCGCCTGCTGAAGAAGAGAGGCAGCTTCTCCTCCCTGAGCAGCCATGAGGTCAAGGCCAAGGAGACCGCGGGCAGAACCAAAGACTCCGTGAGCACGGTGTCTTACATAGACGAGCCCGGCCACCACGATGACGCCCCCAGACCCGCGGTGCAGATGGAGAACACGTTCCAGACAGCCCCTGCTAAGAGGTTTCCAGTCGCCACCGTCAACAACATCTTAAAGGATGTGCTGACAAGTTATCTACAGGAAGAGAGGTACGAGGCCGAGCTCTGCAGACAGATGACCAAGACGATATCCGAGGTCATAAAAGCCAGAGTGAAAGACTTAATGATTCCGCGATACAAGATCATTGTCCTCATCAGCATCGGGCAGCTGAACGAGCAGAACATGCGCGTCGGCAGCCGCTGTCTCTGGGACCCCACGAACGACACCTTCTCCTCCTACTCCTTCAGAAACGACTCCTTGTTCGCTGTGGCAAACGTCTACGCCGTCTACTTTGAGTAGAACGACGGCCAGACAACTCGCCGTCATTGTGAACGACTCTGATTGATGGTTCTATGTATATGATACTGTGAGAAGAACTGGGGTAATCATGTGCACACCTGATCAAAAATACATCTATATTGTTCGTCCAATAAACAACTCACACTTACACCTCCTGGTTAAAGGCTTATGAAATATTATCCTGTCTAAAAAATTTTAGAATATTATTGCTTCCATCGTTATAATTGCTTCAATCCAATCAATCCAGCTTGTACAACTTGTAAATTGTGAGTTCAGAATCAATGTTGCACATAAactgtctgtgttttcatgcttgtgctgctgcttttgtttttaagatttctAAGCTACATTTGTGTATCAGGTTTGAAAGATCTGCAACACGTTTGACCTGTTTTATTCAGCGAGTGTTGCCATAAAAGCTTGTGCGTTGTCAATGAAGATATATTtactaattaatcaattaaaaacaagatttaaatgATAACGttgatatataatgtataataaatacatttctgaaaa

Function

NR:

description
PREDICTED: tctex1 domain-containing protein 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005200 True 1668 mRNA 0.48 5 18826986 18830395

Neighbor

gene id symbol gene type direction distance location
AMCG00005202 NA coding downstream 13651 18807071 ~ 18813335 (-)
AMCG00005208 NA coding downstream 45421 18775468 ~ 18781565 (-)
AMCG00005209 NA coding downstream 88843 18733960 ~ 18738143 (-)
AMCG00005196 NA coding downstream 142190 18679066 ~ 18684796 (-)
AMCG00005193 NA coding downstream 281573 18542551 ~ 18545413 (-)
AMCG00005201 sgip1a,sgip1 coding upstream 1562 18831957 ~ 18851968 (-)
AMCG00005210 LOC107591166 coding upstream 62686 18893081 ~ 18909992 (-)
AMCG00005211 NA coding upstream 80766 18911161 ~ 18972862 (-)
AMCG00005216 NA coding upstream 148240 18978635 ~ 18982040 (-)
AMCG00005212 LOC106598444 coding upstream 212425 19042820 ~ 19047365 (-)
G146023 NA non-coding downstream 474854 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 528883 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 801312 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 1861912 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 2451569 16374662 ~ 16375417 (-)
G146189 NA non-coding upstream 253600 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 387996 19218391 ~ 19219758 (-)
G146257 NA non-coding upstream 633612 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 780371 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 873609 19704004 ~ 19732117 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 62688 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1280654 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 2848131 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3291841 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 3857744 14964414 ~ 14969242 (-)
AMCG00005214 NA other upstream 182682 19013077 ~ 19024461 (-)
G146313 NA other upstream 739664 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 927837 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 1168772 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 1273231 20103626 ~ 20107827 (-)

Expression


Co-expression Network