AMCG00005202


Basic Information

Item Value
gene id AMCG00005202
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18807071 ~ 18813335 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005202
ATGGCTGGCGTGCCCTCCTTTGGGAGTTCGAGCCCAGGAGGTTCAGCTGGCTCAGACGACCATGAGTTCGACCCCTCGGCCGAGATGCTCATCCACGACTACGACGACGAACGCACCCTCGAGGAGGAAGAGCTGATGGAGGGGGAGACCAATTTCAGCGCGGAGATCGAGGATCTCGCCCGGgaaggtgaaatgcccatcCAGGAGCTCCTGAGCCTGTATGGCTACGGGGGCTCTcccgaggaagaggaggaggaggaggaggatgaagatggagaagtggaggaggaggacgaggacgaggaggaggacgTGGAAGACGTAGATCACGATGAGACCAGCGGCAGCACCGAGGAGTCGAAGAGGAATTCAAAGGATGAGAGGGTGAAGGATTCGTCTGGTCAGGAGGACGAGACGCAGTCCTCTAACGATGACCAGACTCCCTCCGTCACCTCCCATGGTACAGCCGAGTTAATCCGACCGCGGAGATGCAAATACTTTGAAAGTAACGATGTTGAAGAAGAATCGGAGGAGGATGAAGATTATATTCCCTCTGAGGACTGGAAAAAGGAGATCATGGTCGGCTCGATGTACCAGGCTGAGACGCCGTCCGGACTGAGTAAATACAAAGACAACGAGAGAGGTGCGGTACCGTCGTGCGTTTGCCCGTCTTTACGACGTGCCTGGTCACGGCTTGTCAGTGGTTATCTGTGCTTAACGCCGCCCCCTCCGCTCGTCCACGCAGCGTACGAGAACGACGACCAGCTCTTGTGGAATCCAGAGTTCCTGGCCGAGGACGAGGTTGTGGAGTTCCTGGCCGAGGCCTCAAAGCGCACGGGGGAGGAGAAGGGCGTGGATGCCATTCCCGAGGGGTGTCACATCAAGGACAACGAGCAGGCCCTTTATGAGTTAGTCAAGTGTAATTTCGATACTGACGAAGCCCTGCGGAGACTTCGGTTCAATGTCAAAGCAGCCAGAGAAGAACTGTCTGTCTGGACGGAGGAGGAATGTAGGAATTTTGAACAAGGTCTCAAAGCCTATGGGAAGGATTTTCATTTGATACAAGCGAACAAGGTGAGAACTAGATCTGTAGGCGAGTGTGTGGCCTTTTATTACATGTGGAAGAAATCTGAGCGTTATGATTTCTTTGCACAGCAAACCCGACTTGGCAAAAGGAAATACAACCTTCATCCAGGTGTGACAGACTACATGGACCGGCTCCTGGACGAGACGGAGAGTGCCGCGTCGAGCCGTGCCGCGTCCCCCCCCCCGACTACCTCCAACAGCAGCACCAGCTACTCTGAGAGGGACGACATCAGCAACCAGAACGGAATAGTATCGCACGGTGCCGGCGAACCCCCATCCAGCGCGAACGAAGTCAGGAGCGAAGCGGTTCAGGCCAACGGGCCCTCGATCCCGAGCCAggagccccccacccccgacaGAGACACTAACGGTGTCGGCAGGCCAGACGCTCTGAGCGACCGCCACGCCGCCGTGGACGAGAACGAGGAGCGCTGCGAGAAGCCGGCGAAGAGACGGCGGGCGGACGGGGACGTGTCCGGAGAGCCGGATACCCCGGGGCCCTCGGAGCCCGAAGAAGCTTTAACCCAGAAAGACTGAACTTCTGCAGAGTGGCTTTCAAAGAGCGCAACCAAAttaacgagagagagagagagctgggctTCCGGGGCCGTTAGGGTCCTCCCGTGACTGGAGAATTCGTCTGATTGTATCGAGCGCATGTCCCCGCAATCCCTCCTTTTGTTTTCTATCCAAAACTTAAGACGCTGTTAAAGCCGTATTATGCCCTATCtatctaaatttaaaaaacaaaagatgtatttcctgtttgtaCTGCAGATTCTTggtaataatatttttgtatgtaaaagatatttatattttttattaagcgtatattattaataataattgctcTTAAGCCATTTTGCAAGAGGTCACTGTTTGGCGATCCAGAAATCTCTCGCAACGTTCAGAGCGATCCTGGAGCTGAAGGCACACACTcttgcactttttgtttttgtcgcTCTCGTACGCGCATGTGCGGCGACCGCACGCCGGCGAAGCAGATAAGAGACTAGACCTCCGGGAAGCCTTACACGTaccctcttgttttttttataggaGTCGAATGAGCCGCTGGCCCCCCCCACGCGGCGCGTTCATGTGATCTTGGCATCAGTGATGTCCTGTAATAGTACTGATTATCGGGCAAATGAAATACAAGCTGTATTTTTCCAGATTTGTAGACTTTgagagatttttctttttcttttctaggAAGTACTTAATCGAGACGTTCTTTCTGTAAAGTTTGTATAGTTTTCTTACCTTGTACAGTTCTTATGCTTTCATTATGAGAGACAAATATTATACTGATtattgatgatttttttttttttttattattcttcacAGGCTGTGGTTTTAACTTTTCCAGTGCTCTTGAAAAGATAAATGAATCGTGCCGTCGCATCCATTGACATTCCTCGTCCCCCACCCCCGACCCGATCTTGCACATCGCTTTCCTCCGTCGAACCAAAATGTCTTATGTAGACGAGCGACAGCAGAACCGATATCGATCCGTCTGACTTTGAACTGATTCGGTGCAACTAAATGAATACTAATCAGTGTCCACATGATTCCAATCAACAGTACAATTAGCATGTGATGTAGGTCGCTGTTAATCGTCACCACTAGGTCTGCGGCCGGGGATTCACCGCAGTCACTGCAGCTGAACTGTCTGAAGTCTTTAGTTTGTTGCCGTCTGGCCGTGTTGAAATAGTGTTACTATCTTGTACTTCATGCTTGAACTCTGCAGACATCCGCTGTTTTTATACACACGCCCTTTGTGTCTGAAAGCTGCGGCTTCAGAATCCTTCAAACGggtgtcatttatttataattctgcTCTGGATTCATTTCTCTGACAAGATCAAtggctgtatttttttgtttgtttccctccATTAAGCAACTTGTGAATTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005202 True 3015 mRNA 0.50 12 18807071 18813335

Neighbor

gene id symbol gene type direction distance location
AMCG00005208 NA coding downstream 25506 18775468 ~ 18781565 (-)
AMCG00005209 NA coding downstream 68928 18733960 ~ 18738143 (-)
AMCG00005196 NA coding downstream 122275 18679066 ~ 18684796 (-)
AMCG00005193 NA coding downstream 261658 18542551 ~ 18545413 (-)
AMCG00005178 NA coding downstream 697618 18103258 ~ 18109453 (-)
AMCG00005200 tctex1d1 coding upstream 13651 18826986 ~ 18830395 (-)
AMCG00005201 sgip1a,sgip1 coding upstream 18622 18831957 ~ 18851968 (-)
AMCG00005210 LOC107591166 coding upstream 79746 18893081 ~ 18909992 (-)
AMCG00005211 NA coding upstream 97826 18911161 ~ 18972862 (-)
AMCG00005216 NA coding upstream 165300 18978635 ~ 18982040 (-)
G146023 NA non-coding downstream 454939 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 508968 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 781397 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 1841997 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 2431654 16374662 ~ 16375417 (-)
G146189 NA non-coding upstream 270660 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 405056 19218391 ~ 19219758 (-)
G146257 NA non-coding upstream 650672 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 797431 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 890669 19704004 ~ 19732117 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 42773 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1260739 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 2828216 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3271926 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 3837829 14964414 ~ 14969242 (-)
AMCG00005214 NA other upstream 199742 19013077 ~ 19024461 (-)
G146313 NA other upstream 756724 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 944897 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 1185832 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 1290291 20103626 ~ 20107827 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_06628894_06640081 NA coding CI01000340 null 6628869 ~ 6640081 (-)