AMCG00005204


Basic Information

Item Value
gene id AMCG00005204
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18728705 ~ 18733928 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005204
CTGAGATAAGACATTGTGTCAAATGTTACTTTGTTGCCGGTGACTGATTTTTCTGAGGGTCTCCGCTATGAAGAAGGTGGTCCTGGTGACGGGTGCCAATAGCCAGATCCACCTGTGTCTGGCGTGCAGGAATATGCAGCGTGCCAAGGCCGCCAAATCCGCCCTCCTCGTCTCCCACCCGGACGCTGACATCTCCCTGGTGCGCCTCGATGTGTGCAGCATCAAGTCTGTGTTTGAAGCGGCGGAGGAGGTCAAACGGAGGAATGTGATTAGCATGTTTGCAACCGGGGAAGGTCTCCTCACACAACAGGACCGCGTGACATCAGACGGATTGCAGGAGGTCTTCGTCACCAATCTCTTCGGCCATTTTCTACTGATCAGGGATCTGCAGCCGCTCCTGTGCCAGCCCGGCCACGTCTCCCAGTTGGTCTGGACATCATCTAGTAATGCCAGGAGGTCTGCGTTCAGCCTGGGAGACTTCCAGCACAGCCAGGGAGTGGAGTCGTACAGCTCCTCGAAATACGCCTCCGATCTCCTCAGCGTGTCTCTCAACCGGCATTACAACACACGGGGCCTGTATTCCTCAGTAATCTGCCCAGGACTTGTGATGACCAATCTGACTTATGGCATTCTCCCTTCATTCTTCTGGACACTGATCATGCCCATTATGTGGCTGATCCGCCTTTTCACCAACACTTTCACACTCACTCCGTACAATGGCGCAGAGGCCCTGTTCTGGCTGTCTACGCAGAAACCCGAGGCCTTGGACCCTCGAGCGAAGTATCACAGCATGACTTCGGGGCTGGGAAACAACTACACACTCCCCCGAAAAatggACATTGATGAAGAAATGGCCGAGGCCTTTTATGAGAAACTACTGCAGCTGGAAAACCGAGTCCGGAAGAAACTAAAATCTGAAGAAGATGAACTAGATGCTTACAGAAGTTACCTGCATCAAATTGAGTAGTGTTGATACCTGATCTCTCTCACCTCTTTAGCGAGTTTTACATTTATGATTCTGTTACAGGCATCACATTCCAAAGAAGCTGTCATTCTATTGAGTTCAGCTTTTGATCAGGGgctggttgcataaaactatattagacttGTCTTAATTTGACAGAATAGTCTAATGTAAGTCTTGTTCGTAACGTTctacagaaaaatatacaaatggaTGAAAATAGTTTGAAAGGCAAGCCAGATTGCTGAAGTTACTCTATTTGCATAATGGCATGgacatacaatacaaattaaggTCAGGTACtcattgcttttgtgtttagGTGATTTATTATTAGTTGCACAGGGAATATAGAATTTGCCCTTCATGCTTTAAGGGAGCTGAATGGTTTGGGGTTTGAGATCACTGATGCAACAGGCCTGTCTAGTCTTGCCCCTAGTGAGGCCAGACTCTGTGGAAATCCCAGTAAAACGTTTAATTTCTGGATGGAGGCTTCTGGGAATCCTCGTTATTTCCCTCTGGCCCATGGCAAGTGGGATTAAACCGGCGGGGgaaaggaacattttaaaagcgaGGCATTGACGCTGGGACTGTGCCATCCAGATCTGCATACTGAACGCTCTAATTCTGTACTGTGAAGCTGGCACTGAAATAGCTGTGTGCGTTAACCTGCGAAGGAAAGGCATCAACAGCCACTTCGCCAACACTGTGATCTAGCCGCACCATatggagtgagaaagtgaagggcATAaggttttgcatattttatatttgttttatctaaGAGCTCCAAAAAAAAGAAGTACAGCAAACACTTTTTCTAACAGTTTTAGTTAAGAGTCCCACTGGGTTTACATAATCCCAGACAGTCTGTGGCAGAGTTGTTACGTTTTGTTGTACACTATTACCGCATTCTCAGTTGTGTTGGAATCAACCTATATCTTATCAATGCTTGCATCTTCTCATGAGCTTCTTAAAGGAACCTTCATTCAGTCAAAACTCGAAATAAATCAAGGCTGTAGCTATCGAGTTTGAAAGTTGCAGTTTagatacatttcattttcttcttatgGGTTTTTTGAAAGGTTAACAGTGAACATGTGCCAACCCTCGTGCAGCAGAGAATagtatttcctttgttttagtGGAAACTAGATTGACCACGGTTCAAACATTAGATAATAACACTACACCCAAGGATGCAATTGTCACTGAGGGAAAGACAGGATAACACAAAAGTCAAAGGTGATGTATGTGCTTCTTCTGAGAGTATTAGGTCTTTAAAGACAATGGAGTGGCTATACATGCTTATGAGTTTGGTTATGAAATTGTACTACACTGACACAAACCTCAGACTGTTCACTGTTCAGCCTTTTAGGATTCATCATGATTAGTTTCAATGAACTGTagtgcaaaatataataataattaagtgcTTGTTTAATTCTAAGTACCTGGTAATATGCTGCTATCTAATGATTGTCTTATAGTCCATACTAAGATCTAATTGTCATACTATTCATGTACTGTGGAACCAAAATATGGCTTGGTCAATAAATGATACATACTAAAAA

Function

GO: NA

KEGG:

id description
K13373 HSD17B7; 17beta-estradiol 17-dehydrogenase / 3beta-hydroxysteroid 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005204 True 2538 mRNA 0.44 8 18728705 18733928

Neighbor

gene id symbol gene type direction distance location
AMCG00005205 ddr2,ddr2a,LOC106584138,LOC106560289 coding upstream 2490 18713405 ~ 18726215 (+)
AMCG00005206 uap1,LOC106584139 coding upstream 32999 18684208 ~ 18695706 (+)
AMCG00005195 nos1ap,LOC107711121,LOC107551033,LOC107692421,LOC108271954 coding upstream 64440 18645445 ~ 18664265 (+)
AMCG00005194 nos1ap,LOC107692421,LOC107711121,LOC107551033 coding upstream 93653 18630414 ~ 18635052 (+)
AMCG00005192 rgs5a,LOC107732440,LOC108441543,LOC107083032,LOC107564083 coding upstream 192478 18526096 ~ 18536227 (+)
AMCG00005203 serbp1a,LOC107724138,LOC107551037,LOC102797140,LOC107684131 coding downstream 8064 18741992 ~ 18753590 (+)
AMCG00005198 NA coding downstream 59804 18793732 ~ 18806490 (+)
AMCG00005197 NA coding downstream 90963 18824891 ~ 18826492 (+)
AMCG00005217 NA coding downstream 358299 19092227 ~ 19115694 (+)
AMCG00005231 NA coding downstream 818535 19552463 ~ 19564086 (+)
G146043 NA non-coding upstream 185865 18541256 ~ 18542840 (+)
G146021 NA non-coding upstream 430602 18297874 ~ 18298103 (+)
G145975 NA non-coding upstream 656930 18020892 ~ 18071775 (+)
G145960 NA non-coding upstream 869070 17859136 ~ 17859635 (+)
G145928 NA non-coding upstream 992001 17735023 ~ 17736704 (+)
G146088 NA non-coding downstream 22147 18756075 ~ 18756595 (+)
G146090 NA non-coding downstream 23739 18757667 ~ 18757871 (+)
G146091 NA non-coding downstream 30115 18764043 ~ 18764298 (+)
G146140 NA non-coding downstream 159139 18893067 ~ 18896727 (+)
G146172 NA non-coding downstream 314620 19048548 ~ 19053126 (+)
G145932 NA other upstream 957180 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 3343894 15379599 ~ 15384811 (+)
AMCG00005060 LOC106599426 other upstream 4540376 14155155 ~ 14188329 (+)
G144940 NA other upstream 5947535 12780580 ~ 12781170 (+)
G144677 NA other upstream 7065337 11662681 ~ 11663368 (+)
AMCG00005199 wdr78 other downstream 81101 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 741211 19475139 ~ 19530453 (+)
G146305 NA other downstream 845645 19579573 ~ 19579807 (+)
G146519 NA other downstream 1448426 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 1519081 20253009 ~ 20279786 (+)

Expression


Co-expression Network