AMCG00005208


Basic Information

Item Value
gene id AMCG00005208
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18775468 ~ 18781565 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005208
ACGGTCTGAAGCTGGTTCCTCGCGGACTCATCCGTATCGAGCCTGGACCCGTGTTCCTCATGGGCTCCAACGTCACCGTCTACTGCCATTCTCTCAAGGTCAACTGCCGTGACAGATTGCAGATCTATCTGAACGAAGAGCAGCAGACGTCTCTGGAAAAAGTGAACTGTTCAACGGTCAGGCTTCACCTGGTGAACTTCCGAACCCCTCAATCCACTCTGAGGTGTGATGTGGTTCACCGAGATATAAAGACGCCCATCTGTGGCCAGACCATCGAACCAGGATatCCCCCAGAGAATCCGACAAATGTAAGTTGTCTGACCCGAAGGGACTCTAAAAGCATGCTATGCAGTTGGAAGAAAGGGAAGGAAACCCATATAGCCACGAGCTACACGGTGACATTCGAACAGACCAAAACCTTTTCTCTTCAGAGTGATCATGCAGAGAAAATCCAGGTGGCTTTGTCCTCCTTTGAAAACGAGTTCAGTGTTTCTATAAAGGCAAAAAATCTCCTTGGAGAAGCACTCTCTGACGTCATACATCTAAGAGTTAAAGACATAGTAATACCCAACCCACCCACGATAACCAGCGTAGATTTTGTGAATTGTTCTGAAGAGGCTGTGGTTCATTGGAATGAGTCAGAGACCCCTGAATCTCTGAGTGTTAGCGTGCGACACAGTCCCGGGAACGGCCACCGAGTTTGGCCCTTCACCCAGTATGCGTTTCAGATGCAGGCCTGTGTGGTGAACCGGACGTCCCAGTGCAGCGGATGGGGCCCGTCTTTCACCGTGAGGAGCCCAGAAGCAGCACCGTCTAAAAGACTGGATCTGTGGCAGATCGTTGGAGGCATTCAGGGCACCAGAACACGGAATGTGACGGTTCTTTGGAAGCCCCTCGCTCCTCAAGATTGCAGAGGACAGATTCAGGGATACCGGGTGTTTTACCGTAAGGACGTTGAGGACGATTCAGTCGTCCATACATGTGAGGCCAATGCGACTCAGTACACGGTTACTCTGCCGCCTGCCGTACGACGTCTTCTGGTCACCACCTTCACCTCCGCAGGAAGTTCCCCGGCCGCTGAACTCATCACCGGACAGACAGTTCTTGGGAAACCCACAATTACAAATCTGACATCTGTGAGTCGTTCTGCGCTCTTCCTGACTTGGGAATCATACTGGTACCAGAATGAACCGGCGCTCTGGTACATCATACAGTGGACTGGAAATGACCAGGACATACAATGGAAAAAGCCAATTCCCCTGGAGTCAGGTTTACCATTTTACTGTTCGCCGTCACAGCACAAGGGGAGAGCCAGCCTGCCTCTGCCGAAGGAACCACTAGCTGGGCCAAAGGTGTTGATACTCAAAACTGAGGAAAGACGAATTCTAATCCAATGGGAGGAAATTCCCCTACACCAACGGAGAGGATTTATCCGAAACTATATAGTGTATCTGATGAAAGACCCAGAGCAggcctttttaaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005208 True 1487 mRNA 0.51 10 18775468 18781565

Neighbor

gene id symbol gene type direction distance location
AMCG00005209 NA coding downstream 37325 18733960 ~ 18738143 (-)
AMCG00005196 NA coding downstream 90672 18679066 ~ 18684796 (-)
AMCG00005193 NA coding downstream 230055 18542551 ~ 18545413 (-)
AMCG00005178 NA coding downstream 666015 18103258 ~ 18109453 (-)
AMCG00005179 NA coding downstream 686353 18087405 ~ 18089115 (-)
AMCG00005202 NA coding upstream 25506 18807071 ~ 18813335 (-)
AMCG00005200 tctex1d1 coding upstream 45421 18826986 ~ 18830395 (-)
AMCG00005201 sgip1a,sgip1 coding upstream 50392 18831957 ~ 18851968 (-)
AMCG00005210 LOC107591166 coding upstream 111516 18893081 ~ 18909992 (-)
AMCG00005211 NA coding upstream 129596 18911161 ~ 18972862 (-)
G146023 NA non-coding downstream 423336 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 477365 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 749794 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 1810394 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 2400051 16374662 ~ 16375417 (-)
G146189 NA non-coding upstream 302430 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 436826 19218391 ~ 19219758 (-)
G146257 NA non-coding upstream 682442 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 829201 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 922439 19704004 ~ 19732117 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 11170 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1229136 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 2796613 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3240323 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 3806226 14964414 ~ 14969242 (-)
AMCG00005214 NA other upstream 231512 19013077 ~ 19024461 (-)
G146313 NA other upstream 788494 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 976667 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 1217602 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 1322061 20103626 ~ 20107827 (-)

Expression


Co-expression Network