AMCG00005209


Basic Information

Item Value
gene id AMCG00005209
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18733960 ~ 18738143 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005209
ATGACGTCCATCGTGACCGAGGCGATGATCGAGTCCTACACGCTGATGTTCATCGTGATGGCAACCTTCTTCATTTACTTCTGCGTCATGGTGTGGGCATTTTGCAACCCCAAACTTAGCGGCGAGGAAGAGGAGACGGAGGCGACCAAAGCCCCCGAAACTCACTGCAAGATGTCCAACAGCGTCCAGTACACGGGCATCCCACTGGAGCAAATCCGCACCGTGCAACCTCCAGACATGAGTGCCACTCGTCTGCAGAAGAGCGATGCCACAGATGTGTATTTCTACAACAGCTGGACCACCTCAAATAACAGACCTTATAACATGCAGCGGCTGTGGCCGTATGTGATTCAGAGGAAGTTAAGATGCCGACACCACTTTGCCCAAATTGCCACCTAGCCACTACAGAAGTCTCCCAGAATTCAATGGACCACCACTTCAACCGTCCAAACCCTCGTTCTGACCTGTCAGCGATGGACCCGACCCTCTCTGCAGAGCAACACCCTTCGCAGATGAATTCCACTTTGATAAAACAGCGAGACGAGCCCTTTGCAAGACTGTGGGCTTTAAAAGCACAATGCACTCAGACCCTGCATTCACTATGCATCGTGTGTCACTGTCGAGAGTATTGTCGGCACTACTACGTCATCGCCATCGTATGCTGGCTCACCTGCATTGTAACTACTGTATTGGTGGTCATCACAGCAGTTGTGTTTAGATAGGTCCAAGCTTTGTCAAGGGTTGAGAAACAGACCTGGGGCAGTAGGTTTGGCATGTTCCTTTCAGTTTAATTGAGATCATATTCAAAATATGCaga

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005209 True 817 mRNA 0.50 2 18733960 18738143

Neighbor

gene id symbol gene type direction distance location
AMCG00005196 NA coding downstream 49164 18679066 ~ 18684796 (-)
AMCG00005193 NA coding downstream 188547 18542551 ~ 18545413 (-)
AMCG00005178 NA coding downstream 624507 18103258 ~ 18109453 (-)
AMCG00005179 NA coding downstream 644845 18087405 ~ 18089115 (-)
AMCG00005186 NA coding downstream 660037 18070432 ~ 18073923 (-)
AMCG00005208 NA coding upstream 37325 18775468 ~ 18781565 (-)
AMCG00005202 NA coding upstream 68928 18807071 ~ 18813335 (-)
AMCG00005200 tctex1d1 coding upstream 88843 18826986 ~ 18830395 (-)
AMCG00005201 sgip1a,sgip1 coding upstream 93814 18831957 ~ 18851968 (-)
AMCG00005210 LOC107591166 coding upstream 154938 18893081 ~ 18909992 (-)
G146023 NA non-coding downstream 381828 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 435857 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 708286 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 1768886 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 2358543 16374662 ~ 16375417 (-)
G146189 NA non-coding upstream 345852 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 480248 19218391 ~ 19219758 (-)
G146257 NA non-coding upstream 725864 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 872623 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 965861 19704004 ~ 19732117 (-)
AMCG00005158 NA other downstream 1187628 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 2755105 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3198815 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 3764718 14964414 ~ 14969242 (-)
G145046 NA other downstream 5397214 13336209 ~ 13336746 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3741 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 274934 19013077 ~ 19024461 (-)
G146313 NA other upstream 831916 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 1020089 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 1261024 19999167 ~ 20023507 (-)

Expression


Co-expression Network