AMCG00005214


Basic Information

Item Value
gene id AMCG00005214
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19013077 ~ 19024461 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005214
ATGTCTACCGGCCCTGAGGAGACGTTTGTGGACGCTACTCACAACGCCAGGGATGGAGAGGACTTTCTACAGTGCGTTATACCTATAGAGACCCCGAGCGACAACTACAGCTTGGCAGTAACGATCACACACGGCTTCACTGCTGTCAACCGCCCCGTGATGCGTGTGGTTCCCAGACAGATCGTGAAGCCGAACCCCCCTCTAAACCTGCAGTACAATATGACTCCTGCCGGGGAGCTGAGCCTCAGCTGGACCGACCCACTTCCAGCTTCTTACTCGGTTCAATATGAGGTCCGCTACTCCACAAACACATCTGAGGACACCTGGCAGCGTGTGGAAAGCGTGCCGGCGTCCCCTGCGACTCTCTCTGGCCTGAGAGCGGGCTTGGCGTACACGGCTCAGGTCCGCTGTAGGCTTCGCGACGGACCGGGCCTCTGGAGCGACTGGAGCGGCCATCtctacatatatttaaatgAAGTGACGTATCTCCCGGCGAGGATACTGGCCAGCACAGGCTCCAACGTCACTGTCTACTGCATATTCAACAACCGCAACGTGGACGCGAGAAACGTGGTGTGGTGGCTGAACACTCACGAGAAGGTTCCCGAGAGCCAGTACTCCGTCGTGAACGAGCGCGTGAGCAGCGTCACCCTGCTGAACGTGCGGCCGCAGAAGCGCCGGGGGAGGATTGGCTTCGACGTGCTGCAGTGCTGCCAGCAGGACGGCGAGAACTCCGTCTGCAATTACCGCTATGCCGCCATTTATGCCCAAGATATCAGTGTCGAGATCTCGTGTGAAACGAATGAATACCTGACCAATATGACATGCAAATGGACGCCAGGTTGGCCACAGGACAGCCAGGTCAAGTTCCTTTATcgGATCGGCCGCTCCTGCGCCGCCCTGGAGGCCGACTCGCGCTTCCCTCAGGCGGACGAGTGCCCGGCTTCGGGGCGCGGCTCCAACACCTGCACCTTCCAGCCCCTGTACATGTTGTTCTGCTACGCGATGTGGCTGGAGAACCAGCATGAGCTTGGCACGATGAAGTCCAACCTGACGTACGTCACGCCTATGGATGTGGGTGAGCAGCACAGACACTGTGTTTTGTCATGGTGTACTTTTGGCATGATGTTCTTGACGGTTTGCTGCGGCAGATTGGACGGACCCGGACACTGGAGCGTCTGGAGCAGCCCGGTCTACACTGCGGTTCACGACATTAGAGCGCCAGAATGGGGTCCTGATTTTTGGCGAGTTATCCAAGAGGATCCGGCAAAGAAACAGACCAGTGTCACTCTTCTCATGAAGCCTTTGAGAAGGGAAGACCTCTTCTGTTCAGTGGAGGGTTTTCAAGTTCAGCATCAAACCTCCACGGGTTCGACGTGGTCCGAGCATCTCAATGTGACCACGGCGCATACATTCGTTTGGACCGAAGACCAGCACAGTGTGTCGGTGTTGGCCTTCAACTCACGCGGTGCTTCGGTGATGAACTACAATTTGACACTAGCGAGGCACGCAAGCAGAGCTCGAGCGGTGCAGTCCTTCAGCGTGGCGCTCGTGAACAGCAGTTGCGCCGCCCTGTCGTGGTACTTCCTCCCGAACGTCTCCCTCCCGGAGTCTTTCATTATCGAGTGGAAACGGCGgcgcagggagagagagcagaactGGGCAAAGGCTGTGAAGTGGATCCGAGCACCCGTCAAAGCACGTGACTTTTACATATACGATGACAGGGGGCGGCCGCGGGGGGAACACGCCGCCTACGTCCTCCTGCTGATCATCGCGTTCCTGTCAATCGTCCTGTTCGTGACCCTGGCGATCTCTCAGCACCAAATGAAGAAACTGGTCTGGAAGGAAGTTCCCAATCCTAATAACTGCTCCTGGGCACAAGGAGTTGACTTCAAAAAAGCCGAGACCATCGAGAACCTGTTCAAGCACCCCGAGAGCCTGACCTCGTGTCCCCTCCTCCTGCAATCCGAGACGATCTCCGAGGCGGTGATCGTGGAGAATATGAAGCTCCCGGCGGGGAAGAAGCCGGCGTCTTTCTCCGAGGCGTCCCCATCTGCAGAGGAGGAATGCCCTCGTCCGGTCCACCAGAGCACCGCGGAGCCCGTGGTCCCCGAGCAGCCCCCCGCCACCAGCTCGGAGACCTCCGCCCAGTCCAGGATACAcagcctctgggaGGGTGACAATCCATCGGGCAAACACTCAACGCACGGAGATCCCAGGAACTCTTGCCCCTTCACGTCCTCAGAGGAGTTCTCCGAGGCCTCAGATCAGGATGATAACATTCTCGATGACACGGGTCCGGAGAGAGACCTCTACTACGTGGGCCTAGCTTCAAATGACGAGGAGGAaggggaagaggaggaagaggaacgATTCCTGAAAGAAGACGCTCAGATGCCCTATGGGGATCAGAGAGAAGAGCTTTTGCATGAATCCAATCCTTTATTGGGCTGCCACTCCATTCAGGATGTAAACAAGGACCACAAAGACACACCTGCAAAGAATATCCCTCTATATATGCCTCAGTTCCGAACAGTGTCCAGTAAAATTCAGCATCATCGAAAGCCTTCAGACATTTGA
>TU183873
CACCGATCGACTGACTTTCCGATTCACGCTTTCTCTTCCAGATGACAGGGGGCGGCCGCGGGGGGAACACGCCGCCTACGTCCTCCTGCTGATCATCGCGTTCCTGTCAATCGTCCTGTTCGTGACCCTGGCGATCTCTCAGCACCAAATGAAGAAACTGGTCTGGAAGGAAGTTCCCAATCCTAATAACTGCTCCTGGGCACAAGGAGTTGACTTCAAAAAAGCCGAGACCATCGAGAACCTGTTCAAGCACCCCGAGAGCCTGACCTCGTGTCCCCTCCTCCTGCAATCCGAGACGATCTCCGAGGCGGTGATCGTGGAGAATATGAAGCTCCCGGCGGGGAAGAAGCCGGCGTCTTTCTCCGAGGCGTCCCCATCTGCAGAGGAGGAATGCCCTCGTCCGGTCCACCAGAGCACCGCGGAGCCCGTGGTCCCCGAGCAGCCCCCCGCCACCAGCTCGGAGACCTCCGCCCAGTCCAGGATACAGTACGCCACGGTCCTGATCCCCGAGGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005214 True 2583 mRNA 0.57 14 19013077 19024461
TU183873 False 515 TUCP 0.61 3 19014547 19015663

Neighbor

gene id symbol gene type direction distance location
AMCG00005216 NA coding downstream 31037 18978635 ~ 18982040 (-)
AMCG00005211 NA coding downstream 40215 18911161 ~ 18972862 (-)
AMCG00005210 LOC107591166 coding downstream 103085 18893081 ~ 18909992 (-)
AMCG00005201 sgip1a,sgip1 coding downstream 161109 18831957 ~ 18851968 (-)
AMCG00005200 tctex1d1 coding downstream 182682 18826986 ~ 18830395 (-)
AMCG00005212 LOC106598444 coding upstream 18359 19042820 ~ 19047365 (-)
AMCG00005215 dnajc6 coding upstream 28517 19052978 ~ 19067107 (-)
AMCG00005213 NA coding upstream 47694 19072155 ~ 19080603 (-)
AMCG00005218 NA coding upstream 95703 19120164 ~ 19146827 (-)
AMCG00005224 cachd1,LOC106584031 coding upstream 127529 19151990 ~ 19201412 (-)
G146023 NA non-coding downstream 660945 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 714974 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 987403 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 2048003 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 2637660 16374662 ~ 16375417 (-)
G146189 NA non-coding upstream 59534 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 193930 19218391 ~ 19219758 (-)
G146257 NA non-coding upstream 439546 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 586305 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 679543 19704004 ~ 19732117 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 248779 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1466745 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 3034222 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3477932 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 4043835 14964414 ~ 14969242 (-)
G146313 NA other upstream 545598 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 733771 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 974706 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 1079165 20103626 ~ 20107827 (-)
G146532 NA other upstream 1249930 20274391 ~ 20279746 (-)

Expression


Co-expression Network