AMCG00005216


Basic Information

Item Value
gene id AMCG00005216
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18978635 ~ 18982040 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005216
ATGTATGGAGACGCTGAGACTGGCCACGATCAACCAGTCGAACCAGGGCACAGATACTGGGACGCTACCgaCAACAAGGAGCCATCGGACTGTGGCCCCGGTGAGTCGTTCGCTGTGCCGATGATGTCCCTGGGCGTGGACCTGCGCAGGGGCCGGCGGCGGCACTCGGGGACCCTGCAGCTGCCCCCGCTGGCCTGGAGGCAGGCGGAGAGGGCCCGCACCCCTGACGAAGAGATGATGGCCCGGCCCACCACACTGTCCTTCATCACACCCCGCATAGACATCACGCCCGTGGACCCCGAGTGGTGA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005216 True 309 mRNA 0.66 2 18978635 18982040

Neighbor

gene id symbol gene type direction distance location
AMCG00005211 NA coding downstream 5773 18911161 ~ 18972862 (-)
AMCG00005210 LOC107591166 coding downstream 68643 18893081 ~ 18909992 (-)
AMCG00005201 sgip1a,sgip1 coding downstream 126667 18831957 ~ 18851968 (-)
AMCG00005200 tctex1d1 coding downstream 148240 18826986 ~ 18830395 (-)
AMCG00005202 NA coding downstream 165300 18807071 ~ 18813335 (-)
AMCG00005212 LOC106598444 coding upstream 60780 19042820 ~ 19047365 (-)
AMCG00005215 dnajc6 coding upstream 70938 19052978 ~ 19067107 (-)
AMCG00005213 NA coding upstream 90115 19072155 ~ 19080603 (-)
AMCG00005218 NA coding upstream 138124 19120164 ~ 19146827 (-)
AMCG00005224 cachd1,LOC106584031 coding upstream 169950 19151990 ~ 19201412 (-)
G146023 NA non-coding downstream 626503 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 680532 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 952961 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 2013561 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 2603218 16374662 ~ 16375417 (-)
G146189 NA non-coding upstream 101955 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 236351 19218391 ~ 19219758 (-)
G146257 NA non-coding upstream 481967 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 628726 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 721964 19704004 ~ 19732117 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 214337 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1432303 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 2999780 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3443490 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 4009393 14964414 ~ 14969242 (-)
AMCG00005214 NA other upstream 31037 19013077 ~ 19024461 (-)
G146313 NA other upstream 588019 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 776192 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 1017127 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 1121586 20103626 ~ 20107827 (-)

Expression


Co-expression Network