AMCG00005219 (pgm1,LOC106568718,LOC107731639,LOC107704513,LOC107591179,LOC107739071)


Basic Information

Item Value
gene id AMCG00005219
gene name pgm1,LOC106568718,LOC107731639,LOC107704513,LOC107591179,LOC107739071
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19316755 ~ 19330003 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005219
CGTGGCGGGCCGAGGGGGCCGGGGCGGCGGAGTGAGGACGTGGGGGGCAGTTCCTCGTCGCACATCGCATCTCTCTGGACGCGGGACACGCAGGGCACGGCTTACGGGGACAAAATGACGAAAATCACAAGTGTCAAGACCACGCCGTACAGCGACCAGAAGCCCGGCACCAGCGGCCTCCGCAAGCGGGTCACCGTGTTCCAGCAGAACCCGAACTACGCGGAGAATTTCATCCAGAGCATAATCTCCACCATCGAGCCGGCCGAGAGGCAGGAGGGCGTACTGGTAGTGGGGGGGGATGGACGGTTTTATATGAAAGAGGCGATTCAGCTGATCATCCGGATTGCTGCAGCCAATGGGCTCCTGACTTTGCCAACCGTCCCGTACTCCGACCAGAAGCCAGGAACCAGCGGACTGCGGAAGAAGACGTACATTTTCGAGACCAAGAAAAACTACCTGCAGAATTTTGTGCAGagcatatttttttccattgatCTGAGAGACCGGCAGGGATCAACTGTGGTCGTGGGAGGGGATGGCCGTTATTTCAATAAAGCCGCTATAGAAATTATAACCCAGATGGCAGCTGCCAACGGGATTGGCCGTCTGGTCATCGGACAGAACGGGATCCTCTCCACCCCGGCGGTGTCCTGTATAATTAGGAAGATCAAAGCCATTGGAGGCATCATTCTGACAGCCAGCCACAACCCAGGTGGACCCAATGGAGACTTTGGTATTAAGTTCAACATTTCCAGCGGAGGTCCCGCTCCAGAAGCCATCACCGACAAAATCTTCCAGATCAGTAAGACGATTGAAGAGTACGCCATCTGCCCTGAGCTAAACGTAGACCTGACCACCATAGGCAAGCAGCAGTTCGACCTAGAAAACAAGTTCAAACCATTTACAGTTGAGATCGTCGACTCTGTGGAGTCCTACGCCAACATGCTGAGGAACATCTTCGACTTCGCGGCCCTGAAAGAGCTGCTGTCCGGACAGAATCAGCTGAAGATCCGGATAGACTCCATGCACGGAGTGGTGGGACCGTACGTCAAGAAGATCCTCTGTGAGGAGCTGGGCTCTCCGGCCAACTCCGCGGTCAACTGTGTCCCCCTGGAGGACTTCGGCGGCCACCACCCCGACCCCAACCTGACCTACGCGGCCGACCTGGTGGACACCATGAAGGGGGGGGAGTATGACTTCGGCGCTGCTTTCGATGGTGACGGAGATCGGAACATGGTTCTGGGAAAGCACGGCTTCTTCGTGAACCCCTCGGACTCGGTGGCCGTCATCGCCGCCAACATCTTCAGCATCCCCTACTTCCAGCACACGGGCGTGCGGGGCTTCGCTCGCAGCATGCCGACCAGCGGGGCCCTGGACAATGTTGCGAAAGCTACCAAAATCACTCTGTTCGAGACTCCCACGGGCTGGAAGTTCTTCGGGAATTTGATGGACGCGAACAAACTGTCTCTCTGTGGAGAGGAGAGTTTCGGCACCGGCTCCGACCACATCCGCGAGAAGGACGGGCTGTGGGCGGTGCTGGCCTGGCTGTCCATCATCGCGGCGCGCAAGCAGAGTGTGGAGGACATCCTGAAGGAGCACTGGCAGAAGTACGGGAGGAACTTCTTCACCAGGTACGACTACGAGGAGGTGGATGCGGATGGAGCCAGTAAGATGATCAAGGACCTGGAGGCCACGATGCTGGACAGGGCCTTCATCGGACAGAAGTTTTCCGCGGGGGACAAGACCTACACCGTGGAGCGAGCGGACAACTTCGAGTACAGCGACCCGGTGGATGGGAGCATCTCTCGGAACCAGGGTCTCCGCCTCATCTTCTCTGACGGCTCTCGCATCATCTTCCGTCTCAGCGGGACGGGCAGCGCTGGGGCCACCGTGAGGCTCTACATCGACAGCTACGAGAAGGACCCCCAGAAGATCTACCAGGACCCCCAGGTCATGCTCGCCCCCCTTGTCACCATCGCGCTCAAAATCTCCCAGCTCCACGAGCGGACCGGCCGGACGGGCCCCACGGTCATCACATGAGCCCCGAGCAGCGGCACGCCGGTTCCAGCAGAGCGAGAGAGCGCTAGAGCGTAAACAACACCCCCAACTTCAAGTCTAGTCTTCCTTCAGAGTGTTTTAGGTTTCGTGACAAAATGtacacttaaaatatatatatatatttaaaaaaatcacaaaactaATAAAGCTGTTCAAAAGGA

Function

symbol description
pgm1 Predicted to enable phosphoglucomutase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be active in cytosol. Is expressed in central nervous system; digestive system; myotome; notochord; and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation It; endometrial cancer; and teratoma. Orthologous to human PGM1 (phosphoglucomutase 1).

NR:

description
PREDICTED: phosphoglucomutase-1-like

GO:

id name namespace
GO:0019388 galactose catabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005992 trehalose biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0004614 phosphoglucomutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01835 pgm; phosphoglucomutase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005219 True 2219 mRNA 0.57 12 19316755 19330003

Neighbor

gene id symbol gene type direction distance location
AMCG00005226 NA coding downstream 72138 19243699 ~ 19244617 (-)
AMCG00005223 NA coding downstream 89756 19219826 ~ 19226999 (-)
AMCG00005225 NA coding downstream 100616 19207738 ~ 19216139 (-)
AMCG00005224 cachd1,LOC106584031 coding downstream 115343 19151990 ~ 19201412 (-)
AMCG00005218 NA coding downstream 169928 19120164 ~ 19146827 (-)
AMCG00005221 NA coding upstream 2238 19332241 ~ 19340709 (-)
AMCG00005220 NA coding upstream 19569 19349572 ~ 19359668 (-)
AMCG00005222 foxd3,LOC107717135,LOC107591180,LOC107692383 coding upstream 36138 19366141 ~ 19367265 (-)
AMCG00005227 NA coding upstream 136193 19466196 ~ 19475443 (-)
AMCG00005234 NA coding upstream 158647 19488650 ~ 19492515 (-)
G146227 NA non-coding downstream 96997 19218391 ~ 19219758 (-)
G146189 NA non-coding downstream 230714 19083995 ~ 19086041 (-)
G146023 NA non-coding downstream 964623 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 1018652 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 1291081 18024765 ~ 18025674 (-)
G146257 NA non-coding upstream 134004 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 280763 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 374001 19704004 ~ 19732117 (-)
G146347 NA non-coding upstream 424193 19754196 ~ 19754744 (-)
G146348 NA non-coding upstream 426244 19756247 ~ 19757237 (-)
AMCG00005214 NA other downstream 292294 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 552457 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1770423 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 3337900 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3781610 15503082 ~ 15535145 (-)
G146313 NA other upstream 240056 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 428229 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 669164 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 773623 20103626 ~ 20107827 (-)
G146532 NA other upstream 944388 20274391 ~ 20279746 (-)

Expression


Co-expression Network