Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00005222 |
| gene name | foxd3,LOC107717135,LOC107591180,LOC107692383 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 19366141 ~ 19367265 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| foxd3 | Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Acts upstream of or within several processes, including iridophore differentiation; negative regulation of macromolecule metabolic process; and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including mesoderm; nervous system; neural crest; neural keel; and neural plate. Human ortholog(s) of this gene implicated in vitiligo. Orthologous to human FOXD3 (forkhead box D3). |
| description |
|---|
| forkhead box protein D3 |
| id | name | namespace |
|---|---|---|
| GO:0060351 | cartilage development involved in endochondral bone morphogenesis | biological_process |
| GO:0048484 | enteric nervous system development | biological_process |
| GO:0048485 | sympathetic nervous system development | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0050935 | iridophore differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0001822 | kidney development | biological_process |
| GO:0048846 | axon extension involved in axon guidance | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0048937 | lateral line nerve glial cell development | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0001658 | branching involved in ureteric bud morphogenesis | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0051090 | regulation of DNA-binding transcription factor activity | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0008301 | DNA binding, bending | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00005222 | True | 705 | mRNA | 0.67 | 2 | 19366141 | 19367265 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00005220 | NA | coding | downstream | 6473 | 19349572 ~ 19359668 (-) |
| AMCG00005221 | NA | coding | downstream | 25432 | 19332241 ~ 19340709 (-) |
| AMCG00005219 | pgm1,LOC106568718,LOC107731639,LOC107704513,LOC107591179,LOC107739071 | coding | downstream | 36138 | 19316755 ~ 19330003 (-) |
| AMCG00005226 | NA | coding | downstream | 121524 | 19243699 ~ 19244617 (-) |
| AMCG00005223 | NA | coding | downstream | 139142 | 19219826 ~ 19226999 (-) |
| AMCG00005227 | NA | coding | upstream | 98931 | 19466196 ~ 19475443 (-) |
| AMCG00005234 | NA | coding | upstream | 121385 | 19488650 ~ 19492515 (-) |
| AMCG00005233 | NA | coding | upstream | 156547 | 19523812 ~ 19529682 (-) |
| AMCG00005228 | NA | coding | upstream | 207971 | 19575236 ~ 19600283 (-) |
| AMCG00005230 | NA | coding | upstream | 255990 | 19623255 ~ 19627636 (-) |
| G146227 | NA | non-coding | downstream | 146383 | 19218391 ~ 19219758 (-) |
| G146189 | NA | non-coding | downstream | 280100 | 19083995 ~ 19086041 (-) |
| G146023 | NA | non-coding | downstream | 1014009 | 18351867 ~ 18352132 (-) |
| G146022 | NA | non-coding | downstream | 1068038 | 18297847 ~ 18298103 (-) |
| G145995 | NA | non-coding | downstream | 1340467 | 18024765 ~ 18025674 (-) |
| G146257 | NA | non-coding | upstream | 96742 | 19464007 ~ 19464975 (-) |
| G146315 | NA | non-coding | upstream | 243501 | 19610766 ~ 19611005 (-) |
| G146322 | NA | non-coding | upstream | 336739 | 19704004 ~ 19732117 (-) |
| G146347 | NA | non-coding | upstream | 386931 | 19754196 ~ 19754744 (-) |
| G146348 | NA | non-coding | upstream | 388982 | 19756247 ~ 19757237 (-) |
| AMCG00005214 | NA | other | downstream | 341680 | 19013077 ~ 19024461 (-) |
| AMCG00005207 | LOC107384419,LOC103139997,LOC107082609 | other | downstream | 601843 | 18741884 ~ 18764298 (-) |
| AMCG00005158 | NA | other | downstream | 1819809 | 17543146 ~ 17546332 (-) |
| AMCG00005114 | tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 | other | downstream | 3387286 | 15958704 ~ 15978855 (-) |
| AMCG00005111 | NA | other | downstream | 3830996 | 15503082 ~ 15535145 (-) |
| G146313 | NA | other | upstream | 202794 | 19570059 ~ 19573318 (-) |
| AMCG00005240 | NA | other | upstream | 390967 | 19758232 ~ 19761446 (-) |
| AMCG00005256 | cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 | other | upstream | 631902 | 19999167 ~ 20023507 (-) |
| AMCG00005263 | NA | other | upstream | 736361 | 20103626 ~ 20107827 (-) |
| G146532 | NA | other | upstream | 907126 | 20274391 ~ 20279746 (-) |
