AMCG00005226


Basic Information

Item Value
gene id AMCG00005226
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19243699 ~ 19244617 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005226
ATGGACTCGAGAGCTTTACAACTTGCTTACGTCAAACGTCTGTCAGATGGTGAAGATGCTTTTCTCCTCTGCACAGATTATTTCCTGAAGCTAGACGCCCCCATGAACAACATCACCACGTCTCAGGGCCAGACCGCCGAGCTGCACTGCAAGGTCTCGGGCAAGCCCACCCCGGCCATCCGCTGGCTGAAGAACGACGCTCCCGTGGTCCCCGAGCCCAGGCGGGTGTCCTTCCGGCTCACCGACTTCGGCTCCCGTCTGCGGATCCGCAACTTGGACACCACTGACACGGGCTACTTCCAGTGCGTCGCCACCAACGGCAAGAGCACGGTGTCAACCACCGGGGTGCTCTTCGTCAAGTTCGGTCTGAGTCCCGCCCCCAACCCGGGAAAACCTTTGCCGtaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005226 True 405 mRNA 0.60 2 19243699 19244617

Neighbor

gene id symbol gene type direction distance location
AMCG00005223 NA coding downstream 16700 19219826 ~ 19226999 (-)
AMCG00005225 NA coding downstream 27560 19207738 ~ 19216139 (-)
AMCG00005224 cachd1,LOC106584031 coding downstream 42287 19151990 ~ 19201412 (-)
AMCG00005218 NA coding downstream 96872 19120164 ~ 19146827 (-)
AMCG00005213 NA coding downstream 163096 19072155 ~ 19080603 (-)
AMCG00005219 pgm1,LOC106568718,LOC107731639,LOC107704513,LOC107591179,LOC107739071 coding upstream 72138 19316755 ~ 19330003 (-)
AMCG00005221 NA coding upstream 87624 19332241 ~ 19340709 (-)
AMCG00005220 NA coding upstream 104955 19349572 ~ 19359668 (-)
AMCG00005222 foxd3,LOC107717135,LOC107591180,LOC107692383 coding upstream 121524 19366141 ~ 19367265 (-)
AMCG00005227 NA coding upstream 221579 19466196 ~ 19475443 (-)
G146227 NA non-coding downstream 23941 19218391 ~ 19219758 (-)
G146189 NA non-coding downstream 157658 19083995 ~ 19086041 (-)
G146023 NA non-coding downstream 891567 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 945596 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 1218025 18024765 ~ 18025674 (-)
G146257 NA non-coding upstream 219390 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 366149 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 459387 19704004 ~ 19732117 (-)
G146347 NA non-coding upstream 509579 19754196 ~ 19754744 (-)
G146348 NA non-coding upstream 511630 19756247 ~ 19757237 (-)
AMCG00005214 NA other downstream 219238 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 479401 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1697367 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 3264844 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3708554 15503082 ~ 15535145 (-)
G146313 NA other upstream 325442 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 513615 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 754550 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 859009 20103626 ~ 20107827 (-)
G146532 NA other upstream 1029774 20274391 ~ 20279746 (-)

Expression


Co-expression Network