AMCG00005229


Basic Information

Item Value
gene id AMCG00005229
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19664101 ~ 19669052 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005229
ATGCTAGGATCTAAAACGGATTGCGAGAACGGCCAGTTTCAGTGCAAAAACCAGAGGTGCATCCCGACCATCTGGAGATGCGACGAGGACGACGACTGCTCGGACAACAGCGATGAGGAGAACTGCCaGCGCAGAAAACTGCATTTGAAGTGTGAGGAGTTGGGCTGGGAGCTGGATGGTGGTGGATCTTGGACCCTATTGTCACTGGGAGTGGAGGCCCGTCTATGCGAACACATCATAGCACATCGCAGCGCCTCTGTGATCCTGAACCGAGTGGCTCAGAGATCCGGATTTCAAAGTGTCGAGAAGCAGTCGGATAAACCTCAGTGTCTGTCAAGGAGACCTACGCAAGAGGTCCTAGATCTCGGGTCTGCCTGGAAGCTGCGATTGTGCACCAACACCTGCACTTTGAAGAGGTGCCTCTGCAGGGCTAGGGGCTCATATGAGCAGGGAGCCCAGTCGAGGGGTTGGGGACAGAGCGAAAATGAAGGGAAGAAAGACACACCTCACATGTTGCCGCACCACTTCTGCGACGGTGTTGCGATCTTTGTGATGGCGGTGCTCATCGGTTGTGGGGGCATTCATGAGCATGAGGGTCGCTACCTTGAGTCGTGTTATTGCCTGAAGCCAGAGCTGACTGTTATGCATCATGTGACTGAGTGGCGCTCCGGCCCGCTGTAG

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005229 True 681 mRNA 0.55 5 19664101 19669052

Neighbor

gene id symbol gene type direction distance location
AMCG00005230 NA coding downstream 36465 19623255 ~ 19627636 (-)
AMCG00005228 NA coding downstream 63818 19575236 ~ 19600283 (-)
AMCG00005233 NA coding downstream 134419 19523812 ~ 19529682 (-)
AMCG00005234 NA coding downstream 171586 19488650 ~ 19492515 (-)
AMCG00005227 NA coding downstream 188658 19466196 ~ 19475443 (-)
AMCG00005241 NA coding upstream 57892 19726944 ~ 19741365 (-)
AMCG00005250 LOC103463064,LOC103355575,LOC104919037,LOC103137203,LOC101157045 coding upstream 115822 19784874 ~ 19799356 (-)
AMCG00005249 NA coding upstream 130682 19799734 ~ 19805056 (-)
AMCG00005251 orc1 coding upstream 177739 19846791 ~ 19855209 (-)
AMCG00005252 NA coding upstream 188806 19857858 ~ 19878152 (-)
G146315 NA non-coding downstream 53096 19610766 ~ 19611005 (-)
G146257 NA non-coding downstream 199126 19464007 ~ 19464975 (-)
G146227 NA non-coding downstream 444343 19218391 ~ 19219758 (-)
G146189 NA non-coding downstream 578060 19083995 ~ 19086041 (-)
G146023 NA non-coding downstream 1311969 18351867 ~ 18352132 (-)
G146322 NA non-coding upstream 34952 19704004 ~ 19732117 (-)
G146347 NA non-coding upstream 85144 19754196 ~ 19754744 (-)
G146348 NA non-coding upstream 87195 19756247 ~ 19757237 (-)
G146358 NA non-coding upstream 102720 19771772 ~ 19774991 (-)
G146461 NA non-coding upstream 381064 20050116 ~ 20052921 (-)
G146313 NA other downstream 90783 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 639640 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 899803 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 2117769 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 3685246 15958704 ~ 15978855 (-)
AMCG00005240 NA other upstream 89180 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 330115 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 434574 20103626 ~ 20107827 (-)
G146532 NA other upstream 605339 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 647008 20316060 ~ 20339165 (-)

Expression


Co-expression Network