AMCG00005242 (slc1a7,LOC106600499,LOC105022788,LOC105925312)


Basic Information

Item Value
gene id AMCG00005242
gene name slc1a7,LOC106600499,LOC105022788,LOC105925312
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19967679 ~ 19977076 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005242
ATGTCAGGACTGGCAGCCCTGGATGCCAAGGCCTCCAGCCGGCTGGGCATCATCACCATCTCGTACTACCTGTGGACCACCTTCGTGGCAGTGGTCGTGGGCATCATCATGGTGTCCATCATCCACCCCGGGGGGGCGGCGCAGAAGGAGAGCACGGAGGACAGCGGCAAACCCATCATGAGCTCCGCCGACGCCTTGCTCGACCTCATCCGAAACATGTTTccatccaacctgattgaagccACTTTTCAGCAGTACCGGACCAAGATCATACCCATCATGAAGACCCCCAAGTCCCCCCAGGCCGCGGCCGAGACCACCACTCGGCGGATCCTCATCTACGGGATCCAGGACGACAACGGCACAGATATCCAGAACTTCTCCCTGGACCTCACACCCCCGCCTGATGTCATCTTCCGCTCGCTGCCTGGCAGCAGCGATGGCATGAACGTGTTGGGCATTGTCATCTTCTCTGCCACAATGGGTATAATGTTGGGTAGGATGGGGCCCAATGGCAGCGCTTTGGTGAACTTCTGCCAAAGCCTGAATGAAGCCGTCCTGAAGATCGTTGCCATAGTTATCTGGTACTTCCCCTTCGGCATCGTCTTCCTGATCGCCGGGAAGATCCTGGAGATGGACGACCCGACGGCCATCGGTAAGAAGCTGGGGTTCTACGCCATCACAGTGGTGCTGGGCCTGGTGCTGCACGGCCTCTTCATCCTGCCCTGCATGTACTTCTTCATCACAAAGAAGAACCCCATTGTGTACATCCGCGGGATCCTGCAGGCCCTGCTCATCGCGCTGGCCACGTCCTCCAGCTCTGCCACGCTGCCTATCACTTTCAAGTGCCTCCTGGAAAACAACCACATCGACCGGCGCATCATCCGCTTCGTGCTGCCCGTGGGCGCCACCATCAACATGGACGGCACCGCGCTGTACGAGGCCGTGGCCGCCATCTTCATCGCCCAGGTCAACAACTACGAGCTGGACTTCGGACAGATCATCACCATCAGTATCACAGCCACAGCAGCCAGTATCGGCGCAGCAGGGATCCCGCAGGCTGGCCTGGTTACAATGGTGATTGTGCTGACCTCAGTTGGATTGCCCACTGATGACATCACTCTAATCATCGCTGTCGATTGGGCGCTGGACAGGTTCAGGACCATGATCAATGTGATGGGCGACGCGCTGGCCACGGGAATCATGGCGCACATATGCAGGAAAGACTTCAACAAGGAGGGAGACGAGGTACCGCTGATCTGCGAGACAAAGCCGATGATCAGTATCCAGCAGCTGATGGCCTACCAGAAAAATGGCTGCTTCCAGCCCCCCCCGGACGGCAAGCCGGAGCCCATCCCCCCCGACGTGGCCCGGCTGATGCAGCTGGAGGAGGGTGTGCGGCCGGAGAAGAAGAAAGTCCACCACCCCCCAAAACGCGTGGAAAAAGACCACTGCTCCATCGACATGAACGGACTGGAGACTAACGTATAA

Function

symbol description
slc1a7 Predicted to enable anion transmembrane transporter activity. Involved in neurotransmitter reuptake. Predicted to be integral component of postsynaptic membrane. Predicted to be active in glutamatergic synapse. Predicted to be integral component of presynaptic membrane.

NR:

description
PREDICTED: excitatory amino acid transporter 5-like

GO: NA

KEGG:

id description
K05618 SLC1A7, EAAT5; solute carrier family 1 (glutamate transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005242 True 1491 mRNA 0.58 9 19967679 19977076

Neighbor

gene id symbol gene type direction distance location
AMCG00005244 NA coding upstream 14013 19935353 ~ 19953666 (+)
AMCG00005247 gpx7 coding upstream 83128 19879542 ~ 19884551 (+)
AMCG00005245 prpf38a,LOC107731643,LOC107684051,LOC107725199 coding upstream 109065 19855589 ~ 19858614 (+)
AMCG00005248 NA coding upstream 122363 19837762 ~ 19845316 (+)
AMCG00005246 NA coding upstream 131193 19816840 ~ 19836486 (+)
AMCG00005254 NA coding downstream 38862 20015938 ~ 20019521 (+)
AMCG00005253 tmco1 coding downstream 70307 20047383 ~ 20051117 (+)
AMCG00005255 aldh9a1a.1,LOC102301203,LOC106676834 coding downstream 74873 20051949 ~ 20063397 (+)
AMCG00005262 akr1a1,akr1a1b,LOC107725198 coding downstream 152153 20129229 ~ 20139948 (+)
AMCG00005261 nasp,LOC107551040,LOC107731628 coding downstream 164146 20141222 ~ 20148284 (+)
G146350 NA non-coding upstream 206888 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 374585 19592750 ~ 19593094 (+)
G146306 NA non-coding upstream 382023 19585448 ~ 19585656 (+)
G146304 NA non-coding upstream 392105 19573323 ~ 19575574 (+)
G146303 NA non-coding upstream 397676 19569473 ~ 19570003 (+)
G146442 NA non-coding downstream 30340 20007416 ~ 20011135 (+)
G146450 NA non-coding downstream 47097 20024173 ~ 20026061 (+)
G146486 NA non-coding downstream 131026 20108102 ~ 20109541 (+)
G146544 NA non-coding downstream 338931 20316007 ~ 20333122 (+)
G146590 NA non-coding downstream 665192 20642268 ~ 20655773 (+)
G146305 NA other upstream 387872 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 437226 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1146037 18815029 ~ 18821642 (+)
G145932 NA other upstream 2196154 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4582868 15379599 ~ 15384811 (+)
G146519 NA other downstream 205278 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 275933 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 544573 20521649 ~ 20524819 (+)
G146596 NA other downstream 684850 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 722410 20699486 ~ 20702472 (+)

Expression


Co-expression Network