AMCG00005243 (LOC107737066,LOC107384472)


Basic Information

Item Value
gene id AMCG00005243
gene name LOC107737066,LOC107384472
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19907086 ~ 19916367 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005243
CACATTAGTCCTGTCGTGCCTTTCAAACCACGCACACcttccacagacagacacagatccTGTGTGGATATTACCCCTGCCACCATACTTTCCTAGAAGAAACAAGAGTGCCTGTCATCTCTGTGCTCTGTGGATTAATGTGCCACACTATCATTTGCCTTCTCTTTAATTAAACTTATATCGATGTTGTCATCATGCAGTCGTTTATAACCAGCCCCGGGGAGCTCCAGCGCAATGAAAACAGTTGAAACTTCGGCGGGTGTGACTTGCCGGTTTTACTCTTCTTGTGCTGGGATTGTGGGAGGGATTGCGAGCCGGGATGAGCGCACAGTGCAGCGGCTACCGCAGCGCGGAGGACCGGCTGGTCAGCGGCTTCACCTGTCCGACCCCGGGGGCCGACGCCGGGGCTGTCTACTGCTGTGGCTTCAACGATATCAAGTACTGCTGCGATGACCCCAACAGCTTCTTCCCCTATGAATATGCGTACATGTGGTGGCTGAGTGTCGGGGCTCTGGTGGGCCTGTCCATCGCAGCTGTGGTCTTGCTGGCGTTCATCATCACTGTGTGCGTCCTTTGCTACCTCTTCATTGCCACCAAGCCCAGCCGGCTGGACAATGGACTTCCCCTGCGAGCTCCAGGTGCGGACCTCAGCGCTCTGGAGGGCCCCAGTCACTCCACGGCCCCGACGGGCCCCCAGGGCTTCCGCAAGAACTTCCTGAGCCGCAAGCTGGACTGCGACAACCAGCCCCCCGAACCCGACCGGCTCTTTCAGCGGTGCTTCATGGCCACAGTGACCACCATCAACGTGGAGGGGCCCTCCTGAGGAACTGACGGACTCTCTCACTCTAATTTAGTTTTATCTTCCTGCTGTGGGCATTCTGAACCTTCTCCTGCTTTCCACAGCTCTACTTATTGATGTACTTACTTTCTTGTGAGAActgcagatgttttattttctgtcctcTTCTAAAGACCAGCCTCCTGGAGCGCGCTTTATTCCTCAAGGGCTATGTCTCCTCGGTGAAGTCCAAGGCAGCGGTGCTCATAGCCGCGGTCTAACGCCAAGCTGAGCCGCCGGTCCTCTGAAAGGAAACTCAGCCAAAGAATAACAGCTCTGTACCGCGGTGTCAGCGTAGCGATCTGAGAAGGCTTTGTGGTTCCCTTTCATATGGACTACAGAAATCAAGTCCTTTTCCTCAAGTGTAAGTAGTAAATGGTATGAGACAAAATGTCTCTGAAAATGTTGAACTGGACTGAGGTTAAGGAGTAATCATTTCTCACATGGAAACCCTTAATGAAATGGCCAATTAAACTGTGTCTGCAAGAACACCTGCCAAAGCAACACTGAAGTGCCCTTGTTCCCTCACCGTCTCGGGCAAACGCCGAAATGCTGGCACACACACATGGGTGCGCAGGCAGGCGAAGGCTTTGAGCTTCGTGTCTTTGTATTGAAATGCTCCAGACCAGCGTGAGTCTCTTGCTAATGATGCAGCCCCTGATGTTTACAAATCAATGTGTCTGCTTTTTCCCCCCATGCATATTTCTGCGTATTTTGTGatgatttaaaaagtttaaaacacaaatcaagcACTGTTAGTGACCGTTTTCCTTTTTAAGCAAATGGTATTAAAGGTTTTTGAGGAGTTGAGAAGGACCACAGTccctggggagagagaaaggagggcACAATCATATCAACGCACAGTCACAGCCCTTATTGCCGAGCTCTCGTTCATCTCTCAACGGCTGTGGGATTGCTAATAACCGAGGTTTATTTGTTAGCAGATCCGGCTGTATAAAATCACGCTCAAATAATCGAACCTCTTTTTGAAATAAGCATGTGACTGATAAAAAGGGGAGAAGCTGTCGATTTAATGCCGAgatttatatgtgtgtgcgtgtctgtatgTCTGCCCATGGTTATGCATTTCCTACTTGGATTAAGGTTCctgttgtatgtattttaaatgaccaaggtctgtctgtctccttttCGAAACATATTCAGCacatcctgtctgtctgtctgtcgatGTCTGTGGCAGTGCCCTGTAATGGTTATGGAGAATAATGGGATTTTGCAAAGTTGGAAGTTGACAGAATGGAAAATGAATTTCTTTGAAAGTGATTAGGCCTCCGTGTCTAACTCATTCTGCATCGTCGTGTGGGGAAGCACTAGTCGTCCAGAGTTTATAACTTACAGATATTACAACTCCCTCGTCGCCTCAAGCTGGCTGAAGGAATTGTAAAGTTTAATTCCTCGgtattaaacaaaatcattgaTCAGACCAGGGGATTTGAAGACCGCGGCACCGCAGAGCATGCCCTGCATCCAAACCTGCTCCagccttcttaaaaaaaaaacagaacagaaagaaaaacatattcagGCCTGTAAGGTATTGCTGTTCTCAGACAGGCTGTAATATTTATCAGATTGTAAGGTATTGGTGAGGTTCTTATGAGTCCAAAACATGCATAacttttcttcttcatcttcatcatcttcAACCTATATTGATTCACTACTGGATGAGGGCCTCCCCAGCTTACTTCAGTTTATATTTTCCCTCTTCtgtgtcacacctgcaaagccTGTTATTTCATATTCTCCTCTTTCATGTGGTCATCTTCAAGGTCTTCTCATcttttgggatccatttgatagttTCGATCTGCTCTTCCTGCAATGTGTCTGACTCATTGCcatttcaataatatatatatatataattccattCCTGAATCAAGAAAGGAAGCCATTCT

Function

NR:

description
PREDICTED: membrane protein FAM159A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005243 True 2766 mRNA 0.47 3 19907086 19916367

Neighbor

gene id symbol gene type direction distance location
AMCG00005252 NA coding downstream 28934 19857858 ~ 19878152 (-)
AMCG00005251 orc1 coding downstream 51877 19846791 ~ 19855209 (-)
AMCG00005249 NA coding downstream 102030 19799734 ~ 19805056 (-)
AMCG00005250 LOC103463064,LOC103355575,LOC104919037,LOC103137203,LOC101157045 coding downstream 107730 19784874 ~ 19799356 (-)
AMCG00005241 NA coding downstream 165721 19726944 ~ 19741365 (-)
AMCG00005257 NA coding upstream 65167 19981534 ~ 19994664 (-)
AMCG00005259 NA coding upstream 107807 20024174 ~ 20026705 (-)
AMCG00005258 uck2,LOC106584056,LOC105005905,LOC106560433,LOC107731246,LOC107668082 coding upstream 114202 20030569 ~ 20043343 (-)
AMCG00005268 NA coding upstream 204413 20120780 ~ 20126843 (-)
AMCG00005264 prdx1,tdx,LOC108267618,LOC108430734,LOC105891340,LOC106600402 coding upstream 210792 20127159 ~ 20131739 (-)
G146358 NA non-coding downstream 132095 19771772 ~ 19774991 (-)
G146348 NA non-coding downstream 149849 19756247 ~ 19757237 (-)
G146347 NA non-coding downstream 152342 19754196 ~ 19754744 (-)
G146322 NA non-coding downstream 174969 19704004 ~ 19732117 (-)
G146315 NA non-coding downstream 296081 19610766 ~ 19611005 (-)
G146461 NA non-coding upstream 133749 20050116 ~ 20052921 (-)
G146469 NA non-coding upstream 146182 20062549 ~ 20063413 (-)
G146487 NA non-coding upstream 191758 20108125 ~ 20109530 (-)
G146503 NA non-coding upstream 229718 20146085 ~ 20147354 (-)
G146576 NA non-coding upstream 605282 20521649 ~ 20523818 (-)
AMCG00005240 NA other downstream 145640 19758232 ~ 19761446 (-)
G146313 NA other downstream 333768 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 882625 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 1142788 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 2360754 17543146 ~ 17546332 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 82800 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 187259 20103626 ~ 20107827 (-)
G146532 NA other upstream 358024 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 399693 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 574684 20491051 ~ 20502206 (-)

Expression


Co-expression Network