AMCG00005248


Basic Information

Item Value
gene id AMCG00005248
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19837762 ~ 19845316 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005248
atgtccaTTTGGGTTCCAGCCTGGGTCTGCTGGGAGATTCTGCTGGCCTCGGCCCTAGAGCCCATCTCTCCCCTGCTGAAGGaagcGATTGCACTTGTGGCTGACGACGAAAACCCAAAATGCTTCACTCAGACAGAAGAAGATTTCACTTGCTTTTGGGAAGACAACAGCAACTCCTCCTACAAGTTCTATTACAAGATCGACGAGTTAGAAACCGAAAAGGAATGCGTCGTCTCACAGCGGAGGACGGATCGGGGCAGTACGCTCCACCTGTGCTCCTTCCCTGAGCAGCATGTGTTCCTGTATGTACAAACCTACATCAGAGTGGTGGATTCCAGCACCAACGCCACAGCCTACTCCCGAGAAGTGAACGTGGAAAACCAAAttCTGTTGGATCAACTCAAGACAATCTCTCTTGTCCTGAACGGAAAGCCGCGTCAGCTAAGGGTGAATGAGTCCAAGTCAACCGTGTACGATCTGGTGGGCCTGAGTCCTGGGCAGGAGTACAGGGTCCAGGTGCGCGCCAGGTTGTCTGACAATAAGTTCTGGAGCACCTGGTCTCCCCCAGTCAGCACGGTGGCCCCCTCGCCTGCAGAGGACATTGACCTGAGGTGCTACACCGCTGACCTCCTCAACATCACGTGCCAGTGGAGCGACGCAAAGGGACAGGGAGACACCCGCTACAAGTTATTTTACCAGCACAGTGGCAGCAGAGGGCTAAACTGGGAGGAGTGTGTGCAGAACGAGACAGATGCCCTGGGCTCGGCCACCCGATGCAGCTTTCCCTGTGGTGGCCCTGGTGACATCACAGTCTCACTCAACGCCAGCTCAGGCCAGCACACCCACACCTACTACACCCTGCCCTTGAGCCGGGCGCGGGTCGAGCCCCCGGCCAGCCTGATGGGGAAGGTGATAGGGGGGCGGCTGTGGCTGTCCTGGGAGCCCCCCCTGGCCCAGCTGGCCGCCCACCTGCGCTACGAGATCCGCTTCTCTGCGCAGGACAACCCACACTGGAAGCACTTCACCCTGGAGCTCCCCAAGAACAGCACGGTGCTGGACGTCGCAGGAGGCAATCAGTACAACATCCAGATCAGGGCCATGGTGGACGGCCAGACGTACGACGGCTTCTGGAGTGACTGGTCTGACTCGATCACTGTGGCCATGCCTTCCCCTGTTGGATTTCTGCCCATTCTAATCATCTCTCTGGTGATGCTCTTGACGACAATTGTGCTGATTGCTACCTTCCCAAAATGTCTGAGAAAGACCAAGTTATTTCTGTGGCCACCCGTACCAAACCTAGAGAAAGTGCTGGAGGGTTTCCTGACCGAGCTCAACAAGCAGTTCCTGCCGGCACAGTCCTTCAACAGCAAACTCTGCAACGACGATGACTTCCCTCCCTCGCGGGTGGAGATCGTGTCCGAGAGGGAGGCCCAGGAAGGCGCCAGGACCCCGGGGGAACAGCGCCAGTCGCCACCGGGTCAAGAGCCGGCCTCCCCACCTCCGTCCGACGGCAAACCGGCGAGCCACTGCAAGGACAACCTAGAGTCCAGCGAGGATTACGTGGTGCTGGACACGCAGAACCTCTCCCGCGGCTTCCACGGGAACGAGTACGTGTACGAAGAGGACCAGCAGGCGGCCCTGGCCCAGCTGCTGCCCGGCGGCGAAGACGGCCCCTGCCAGCCCTGCCTCCACTGGCCAGAGTCCTCGCTGCCCAACCCGCCTTCTCCCACCGACATCCTCAACCACTCCTACCTGCTGCTGTCCGAGTCCCTGTCCAACATGCTGGCCGAGCTGGAGATCTGGGGGACGGCCACCCAGTACACCAACCTGGACACAGGGGCGGTGGCAAATACCGAATGA

Function

GO: NA

KEGG:

id description
K05082 TPOR, MPL, CD110; thrombopoietin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005248 True 1860 mRNA 0.59 12 19837762 19845316

Neighbor

gene id symbol gene type direction distance location
AMCG00005246 NA coding upstream 1276 19816840 ~ 19836486 (+)
AMCG00005236 NA coding upstream 54158 19775479 ~ 19783604 (+)
AMCG00005235 LOC106598390,LOC106594647 coding upstream 65789 19762168 ~ 19771973 (+)
AMCG00005238 NA coding upstream 81972 19742353 ~ 19755790 (+)
AMCG00005237 NA coding upstream 126234 19709336 ~ 19711528 (+)
AMCG00005245 prpf38a,LOC107731643,LOC107684051,LOC107725199 coding downstream 10273 19855589 ~ 19858614 (+)
AMCG00005247 gpx7 coding downstream 34226 19879542 ~ 19884551 (+)
AMCG00005244 NA coding downstream 90037 19935353 ~ 19953666 (+)
AMCG00005242 slc1a7,LOC106600499,LOC105022788,LOC105925312 coding downstream 122363 19967679 ~ 19977076 (+)
AMCG00005254 NA coding downstream 170622 20015938 ~ 20019521 (+)
G146350 NA non-coding upstream 76971 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 244668 19592750 ~ 19593094 (+)
G146306 NA non-coding upstream 252106 19585448 ~ 19585656 (+)
G146304 NA non-coding upstream 262188 19573323 ~ 19575574 (+)
G146303 NA non-coding upstream 267759 19569473 ~ 19570003 (+)
G146442 NA non-coding downstream 162100 20007416 ~ 20011135 (+)
G146450 NA non-coding downstream 178857 20024173 ~ 20026061 (+)
G146486 NA non-coding downstream 262786 20108102 ~ 20109541 (+)
G146544 NA non-coding downstream 470691 20316007 ~ 20333122 (+)
G146590 NA non-coding downstream 796952 20642268 ~ 20655773 (+)
G146305 NA other upstream 257955 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 307309 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1016120 18815029 ~ 18821642 (+)
G145932 NA other upstream 2066237 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4452951 15379599 ~ 15384811 (+)
G146519 NA other downstream 337038 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 407693 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 676333 20521649 ~ 20524819 (+)
G146596 NA other downstream 816610 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 854170 20699486 ~ 20702472 (+)

Expression


Co-expression Network