AMCG00005250 (LOC103463064,LOC103355575,LOC104919037,LOC103137203,LOC101157045)


Basic Information

Item Value
gene id AMCG00005250
gene name LOC103463064,LOC103355575,LOC104919037,LOC103137203,LOC101157045
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19784874 ~ 19799356 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005250
ATGCAAAGCTGTCGGACAGCGAGGAAGCAGCAGCGGATCCTCTGCTCCCGCACGGCGATGTCGGCGTCTGCTGTCTTCATCCTGGACCTCAAAGGGAAGGTGCTGATATGCCGGAATTACATGGGCAACATGGACATGGGTGAGATCGACCACTTCATGCCCATGCTGATGAAGCAGGAAGAGGACGCGGACATGTCTCCACTCCTGAGCCACGGAGCCTCGCACTTCCTGTGGATCAAGCACAGCAATCTGTACCTGGTGGCCATGACCAGGAAGAATGCCAACGCGGCCCTGGTGTTTGCTTTCCTCTACAAGATAGTCGAGGTCTTCAAGGAGTACTTCAAGGAACTGGAGGAGGAGAGCATCCGGGACAACTTCGTCACCGTGTACGAGCTGCTGGACGAGGTCATGGACTTCGGATTCCCGCAAACCACCGACTCCAAGATCCTGCAGGAGTACATCACACAGCAGGGGCACAAGCTGGAGGTGGGCGCCCCGCGGCCCCCAGCAACTGTAACCAACGCCGTGTCCTGGAGGTCGGAGGGGATCAAATACAGGAAGAACGAAGTGTTCATTGACGTCATCGAATCGGTCAATCTGCTGGTGAGTGCCAATGGCAGCGTCCTCCGCAGCGAGATTGTGGGCAGCATCAAGTTGAAGGTGGTCCTCTCCGGGATGCCCGAACTGCGTCTGGGGCTCAACGACAAGGTCCTCTTTGAAATCACAGGCAagGACAAGAGCAAAACTGTGGAGCTGGAGGACGTGAAGTTTCACCAGTGCGTGCGTCTGTCTCGCTTCGAGAACGACCGCACCATCTCCTTCATCCCCCCGGACGGGGAGTGCGAGCTGATGTCGTACCGCCTCAACACCCCGGCCCGCAGCCAGTTCAAGCAGAGATCCACAGCCAACAACGTGGCCATCCTGGTGCCGGTGCCCAGTGACGCAGACTCCCCAAAACTCAAGGCCAGCACCGGCAGCGCCAAGTGGGTCCCAGAGAAGAGCGCGGTCGTCTGGACCATCAAATCCTTCCCCGGCGGGAAGGAATACCTGATGCGCGCGCACTTTGGGCTGCCCAGCGTGGAGAGCGAGCTGCAGGAGGGGAAGCCGCCGATCACCGTGAGCTTCGAGATCCCCTACTTCACCGTGTCCGGCATCCAGGTACGCTACCTGAAGATCATCGAGAAGAGTGGCTACCAAGCCTTGCCCTGGGTCCGGTACATCACCCAGAGTGGAGATTATCAACTACGGACAAACTAGTGGCGGGCTGGAGAGACGAAACTGCACTGGGACACTTTCTGTACTGGGCAGATGAAGAAGATGCCGTTGGGGAATCGAGACTCACCGTTTCCTGCCAGGCAGCTATTCTGTTTCAAAGGGAAGTCCACAGCCGTGGCATCCTGGTAACACTGTGCATTTTTATACAACactgatatgtgtgtgtgtgtatgtaaatacatttcgATTCACACACTTTTTAATTAAGGAAGGAGGGACATAAATTCTGTGATACTTCCCAGCAGTAAAACCTGTCGGACTCTGTTCTCACCAGGAACCAGGCCGAGGATTGTCTGTCCATATTGTTGTTCAATGTCTAGATTGTATGCTgtcctgttttgtgttttgagagagagacatgctttgttattttatagTCCCTTTATAGAAAAGGCAAAGCGAAACGCACTTAACATTTTCAATGTTACACgtcaaacatgaaaacatgaaaaatataaccTTTAATCAACTGCAATAATAACAatctctggataagggcgtctgctaaataaaatctgtgtttttccacagaATAACTCTCACTATGTTATCTGTGTCTGTGGTGACATTATTCTATGCAGAGGCATTGGTTTCAATACCTGGACAGTGTAAACCTGATCAATCATTAACTTAGACTTTGCTCTAGtaattcatttgtttaaaaaaatcgaTTTGATATGTAGCATTTCCATAACAGGGAAGAGATTATTCACAAATgcgagaaaataaataaaaatatctgcGTGTTTTCTTTCTATCCGATCATGGATAAAGCAATGGCACACCTTGATCTCAAATAGTTTGGTCTTGGAGTTCATAAACTGTGCACCTGTGTTTAAAAGATAGATACTGCGAATCTGACTGCAGTTATTTACTCAATGTTTGCAGGAGGTGGCGTTTGGAAGATATTTCTCTCCCAGTGTCTACGGCTGTGCTTTTGctgaattataaaacaaagtgaACAGAACCACACCCAGaacaatatatacttttttagcATTGTGTGAATCTGATGTGCAGTTTACGAGATCTGGGCTTTTTTTAATCAGAACAAATTTGGTTGATATCTGTGAATCCTCAGTCGTTTCTGGGCACTGTTATACACCACCCAGGATTGAGAGACTGTTCAGAAATATTCAGCCCGGGTACAATCTGAGAAAAGCATCACGCTGTCGCTAATTTAATCAGGGTCCTTTTATAATCAATACATCCGGCCAGAAAAGACTCTTCAATTTAAATTCCTCCTATAATGTATTGTGGtattctgatttaatttgtttttctattgttcGTGTAAAGCGTTTGGCCTGCGACAGATTGGCCTTCTATCCCCGTCACCTATTTAAGTTATCTGTACATTATGACACTTTTCCCACAGAGTATACTTATACACCTGGGGATAGAATTGAAAACCTTGCTTGATCAATAGCTGTTTCTTGGTAGGTTATTTATATCATTTCCACTGGAAAGCCCTGGTTAATTTCTAACACTGATTGTATACCTCTGTGTATTTTCTATTGactatgaatgtgtttgtttgctcaGTCACTgtcttatttataaatgtttgctATGGAAACATCGCTAAGGGGGAAATGTTGgctctttttcttgtttaataaaatgctttcaggttgaaa

Function

NR:

description
PREDICTED: AP-1 complex subunit mu-1-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005250 True 2915 mRNA 0.47 12 19784874 19799356

Neighbor

gene id symbol gene type direction distance location
AMCG00005241 NA coding downstream 43509 19726944 ~ 19741365 (-)
AMCG00005229 NA coding downstream 115822 19664101 ~ 19669052 (-)
AMCG00005230 NA coding downstream 157238 19623255 ~ 19627636 (-)
AMCG00005228 NA coding downstream 184591 19575236 ~ 19600283 (-)
AMCG00005233 NA coding downstream 255192 19523812 ~ 19529682 (-)
AMCG00005249 NA coding upstream 378 19799734 ~ 19805056 (-)
AMCG00005251 orc1 coding upstream 47435 19846791 ~ 19855209 (-)
AMCG00005252 NA coding upstream 58502 19857858 ~ 19878152 (-)
AMCG00005243 LOC107737066,LOC107384472 coding upstream 107730 19907086 ~ 19916367 (-)
AMCG00005257 NA coding upstream 182178 19981534 ~ 19994664 (-)
G146358 NA non-coding downstream 9883 19771772 ~ 19774991 (-)
G146348 NA non-coding downstream 27637 19756247 ~ 19757237 (-)
G146347 NA non-coding downstream 30130 19754196 ~ 19754744 (-)
G146322 NA non-coding downstream 52757 19704004 ~ 19732117 (-)
G146315 NA non-coding downstream 173869 19610766 ~ 19611005 (-)
G146461 NA non-coding upstream 250760 20050116 ~ 20052921 (-)
G146469 NA non-coding upstream 263193 20062549 ~ 20063413 (-)
G146487 NA non-coding upstream 308769 20108125 ~ 20109530 (-)
G146503 NA non-coding upstream 346729 20146085 ~ 20147354 (-)
G146576 NA non-coding upstream 722293 20521649 ~ 20523818 (-)
AMCG00005240 NA other downstream 23428 19758232 ~ 19761446 (-)
G146313 NA other downstream 211556 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 760413 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 1020576 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 2238542 17543146 ~ 17546332 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 199811 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 304270 20103626 ~ 20107827 (-)
G146532 NA other upstream 475035 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 516704 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 691695 20491051 ~ 20502206 (-)

Expression


Co-expression Network