AMCG00005251 (orc1)


Basic Information

Item Value
gene id AMCG00005251
gene name orc1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19846791 ~ 19855209 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005251
CTGGCCACGCCCCCTCGATGCTGCCGCTGCATGTACGTTTCTAACGCGCGAAAATCCTGCGTGGCGGTGGAGTGACTGCAAGGAGGGCAATCTGTTATTAAATGTAGAAAGCCGGTTTAAGTGTGTTTATACGTCTGTGTACTGCTTCTATATTATGTGTTTTTACCGGTTATTTTAACATCTTAAACTATTTATCGATTGTCATTAGACGGGGTGGATTTAACAGTCAGTAGTTGCAGTTTGACAAAGTTGCTAAAACTGCAGATTACAGAAAGGATCATTTTCCAGCAGGTGGAGGTCTGCTGGGTTTTGCATTAAGCTCTTATACTTTAATTGTAGCTGAAGATGAGTCGCTATTTCACCAGGCTGATGAATAAACGAGCCTACATCTGGAGCGGAGAGCCCGTCTACGCTGACCGCAAGCTCCGCTCCTTCCTTTATGAAGGCTTCCTCATGAAGGTCGAGGGCAGCTGTGAAAGCCGTCTGATCAAACCTGGACAGTTTATTCTGGTTGAAAGCGATGATGATGACAATCCCTATGTGGCAAAACTGCTCAAGCTCTACAGCGACGACTCCGGGCGGACGGGCAGCAAGCGGGCGGTGGTGCAGTGGTACATGCGGTTTTGCGAGGTGCACAGAAACAAGAGGAAGCTGCTGGGCAGGGAGCCTCACCCGCAGGAAGTGTTTCTGTTCCAGGTGCCCAGCTGTCAGAACGACATCGACATCGAGACCGTACTCGGATCTGTGCAGCTGCAGTACGTGGAGCCGGACGCTCCCTTCCCCGAGACGCGGGGCCAGGAGAGCACACTCTACGTCAAGATGTCGTGGGACGGGAAGGCCTTCAAGCCGGCCGACCCAAACGTGATCGCACAGGGCGCGGAGCCCTGTCGGCCCGCTGAGCCCGCCGCTGCCCTGGCCACCCCGGACCTGGCGGTAATGAAGCGGGCGGTGTCGGTGAGCACGGGCAAGCGGCGGGCGAGGGAGGCGGAGTCGCACCACTCGGCCTCCAAGTCCGCCCAGTCCAAACGGCTGAGCTCCAGACGGCAGGGCAGCTGCCCGTCCACCCCGGGGGTCCGCAAGAAGCTGCAGCTCAACAGTCCAGGGAAGTCTGCGGGGCCCCTGTTCAACACGGACAACGCGCTGGAGGAGATCCTGCAGGAGGAGGTGCAGTCCCACAAGAGAGAGCTGGCCAACAGGCTGCCCTCCAGCCCCTCGCGCTCCCTCACCCTGGCCGTGCGTCTCTCGCCCATCAAGGTCGCTGCCTACCCCCACCACAGCGTCAGCCTCTCCCCCCTGAAGGTCAGGTTGCCCCCCGCCAGCCCCGGAGAAGACCAGGACTCCGCCAGAGCCTGCCTGCCTCCCCTGGAGGAGGATGTGTTCGAGGTGGCCATTCAGACCAGGTCTTCCAAAACCCCCTGGCAAAAAGATGCCACCCCCAGGAAAAGCACAGCCAGGCCGCAAAGACAGGCGTTCACTCCATCACGCCGGAAGGTCTCCTTGGACGTCGGGGACGGGGCTCTGGGGGTGCTggaggaggaggactcACCAGCCCAGGCTGCAGATATCGCCCAGACTGCGGTGACGCCACGCTCACAGAGGAAGTCGGCCCAGCTGGTGGCCTCGCGCATCAGGAAGCAGTTtgaagaagaagaggaaggggaaggggaaagTGATGGCGACAGCGTGGCTGTGAAGAAAAGCCGACAATCCTCATTGTCCCGCACCCCCAGGTCCACGAGGAAGGCCAGGACTCCCCGGAAGACCCCCAGCAGAAAGGCGACCCCCACTACTCCTCGCACGCCCCGCCAGGCCACTCCCAGCATCCCTAGCAGGTCCCTGCCCGCCAGGAAGCCCGGAAACATTCTGGAGGAGGCGAGAGCGAGgctGCACGTGTCCTCTGTCCCCGAGTCCCTGCCCTGCCGAGAACAGGAGTTCCAGGACATCTACAGCTTTGTGGAGAGCAAGATCATGGACGGCACTGGAGGGTGCATGTACATCTCTGGAGTGCCAGGCACGGGGAAGACCGCCACGGTGCACGAGGTGATGCGCTGTCTGCTGCAGGCGGCCGAACAGGACGACATCCCCGGCTTCAGCTTCATCGAGATCAACGGCATGAAGATGACCGATCCCCATCAGGCCTATGTCCAGATCCTGCAGAAGCTGACGGACCAGAAAGCCACGGCCGATCACGCTGCCACCCTGCTGGAGAAGCGCTTCAGCACCCCTGCGCCCAAGAGAGAGACCACCGTGCTGCTGGTGGACGAGCTGGATCTCCTGTGGACCCGTAAGCAGAACGTGATGTACAACCTGTTCGACTGGCCCACGCGCAGACATGCCAAGCTGGTGGTCCTGGCCATCGCCAACACCATGGACCTGCCCGAGAGGATCATGATCAACCGCGTGGCCAGTAGGCTGGGCCTGACCCGGATGTCCTTCCAGCCCTACACCTTCAAGCAGCTCCAGCAGATCATCACCTCGCGCCTGAACCGGGTCCGGGCCTTCGAGGAGGATGCCCTGCAGCTGGTCTCTCGAAAGGTGGCCGCTCTGTCGGGCGACGCTCGGCGCTGTCTGGACATCTGTCGCCGCGCCACCGAGATCTGCGaggtctcctcctcctccgccgccAACGGCCAACGGTCCGGCTCGGGCCTGGTGGGCATGAGCCACGTCATGGAAGCCCTGGATGAGATGTTCTCCTCGCCCTACGTCACCGCCATACGGTGTGCGTCGCTGCAGGAGCAGTTGTTCCTCAGGGCCGTGATCGCCGAGTTCCGGCGCCTGGGGCTCGAGGAGGCCACCTTCCAACAGGTGTTCCGGCAGCACCAGGCCCTGTGCCGGGTGGAGGGGCTGCAGCCGGTCAGCATGTCCGAGGGTTTGGCCACCTGCCTGCGCCTGGGGGCGTgtcggctgctgctgctggagccgAGCCGCTGTGACCTGCTGCTGCGCGTGCGGCTCAACGTCAGCCAGGACGACGTGCTGTACGCGCTGAAGGAGGAGTAAACCGCAACGACGGACAGACACCAACTGAAGGGAAGGCGGGCCcgtatttttatgtaaaaatggaCATCGCTTGTCACTTTCCACGGAGAGGGGAGTATTGGACATTAAACACACGTATAGCCgttgtttttacacatttattttacatacacatttacagaCCATCTTCTGTGGCGGTAAATTGCGTTTTCGTTGTCAATAGTCTGTGGTGTTTTTCAGAATGagccattgttgaaaatgtaacatgttACAGTTCGCTGCACCAGATTGGCCCGGTTTAAACCCGTAGTTACCTGTTGTAAATAACTACCTCACTGGAAGCACTAATAAACTTGGGAATTTATGACTATCCTTTTAAATATGGGCTTCCCTCCCCGCCATGAGGAAAGACAGAAAATTACTAAATAATGTCTGCGACTCTGCACCCCCAAGTGCTCCTGTCCGCTGGTTCTAATGCAAATCTCATCTCCAGTGCCAAAGACCTACCATTGTAGATAGTGTGTGTTAAATGGCTCCAGATTGCGTTTTGAATCCTGGTTTTTACCTTGTGTTCAGGGTTCGGTTGTCCAGACACCACTGGCTTGTGGACTGAGAGCTGATTAACTAATTAGTACCgttttggttttaaatgctGCTCAGGATTACACTTTTACTATTGGGTTATTGCAACAATTATGTGTAAAAGTgaaacagatttttgttttgcttttaatatttgtattgtccctgaagtgtttttgtttttataataaaatatgtctATTTACATGGCTGTCAGATTGGTGTGTTTTGCAGATAAGATAGGTGTCGGTGCTTTTTCACTGCTATAAGGGTTAATGTTGctattaattgctttaattgcaggggttcccagccctggaggagcccctaccctgctggtttttggtccaaccg

Function

symbol description
orc1 Predicted to enable DNA replication origin binding activity. Acts upstream of or within several processes, including chordate embryonic development; cilium assembly; and response to yeast. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in proliferative region and tail bud. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 1. Orthologous to human ORC1 (origin recognition complex subunit 1).

NR:

description
PREDICTED: origin recognition complex subunit 1 isoform X2

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0040014 regulation of multicellular organism growth biological_process
GO:0009790 embryo development biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K02603 ORC1; origin recognition complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005251 True 3918 mRNA 0.57 19 19846791 19855209

Neighbor

gene id symbol gene type direction distance location
AMCG00005249 NA coding downstream 41735 19799734 ~ 19805056 (-)
AMCG00005250 LOC103463064,LOC103355575,LOC104919037,LOC103137203,LOC101157045 coding downstream 47435 19784874 ~ 19799356 (-)
AMCG00005241 NA coding downstream 105426 19726944 ~ 19741365 (-)
AMCG00005229 NA coding downstream 177739 19664101 ~ 19669052 (-)
AMCG00005230 NA coding downstream 219155 19623255 ~ 19627636 (-)
AMCG00005252 NA coding upstream 2649 19857858 ~ 19878152 (-)
AMCG00005243 LOC107737066,LOC107384472 coding upstream 51877 19907086 ~ 19916367 (-)
AMCG00005257 NA coding upstream 126325 19981534 ~ 19994664 (-)
AMCG00005259 NA coding upstream 168965 20024174 ~ 20026705 (-)
AMCG00005258 uck2,LOC106584056,LOC105005905,LOC106560433,LOC107731246,LOC107668082 coding upstream 175360 20030569 ~ 20043343 (-)
G146358 NA non-coding downstream 71800 19771772 ~ 19774991 (-)
G146348 NA non-coding downstream 89554 19756247 ~ 19757237 (-)
G146347 NA non-coding downstream 92047 19754196 ~ 19754744 (-)
G146322 NA non-coding downstream 114674 19704004 ~ 19732117 (-)
G146315 NA non-coding downstream 235786 19610766 ~ 19611005 (-)
G146461 NA non-coding upstream 194907 20050116 ~ 20052921 (-)
G146469 NA non-coding upstream 207340 20062549 ~ 20063413 (-)
G146487 NA non-coding upstream 252916 20108125 ~ 20109530 (-)
G146503 NA non-coding upstream 290876 20146085 ~ 20147354 (-)
G146576 NA non-coding upstream 666440 20521649 ~ 20523818 (-)
AMCG00005240 NA other downstream 85345 19758232 ~ 19761446 (-)
G146313 NA other downstream 273473 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 822330 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 1082493 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 2300459 17543146 ~ 17546332 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 143958 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 248417 20103626 ~ 20107827 (-)
G146532 NA other upstream 419182 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 460851 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 635842 20491051 ~ 20502206 (-)

Expression


Co-expression Network