AMCG00005252


Basic Information

Item Value
gene id AMCG00005252
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19857858 ~ 19878152 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005252
GCGACTTGACATGGCGTCCGGAGGCGGCTGTTTTTCTCAGGGCCCTGGACGAGCATAAACACGGCACGAAGATGGAGGGCGTTTGAGCGCGTCGCGCACTACCGGACGGCTCGTAAAACACAAGGTACTCGGAAggctctccccctctctccctgctccaCCGACACGAACGGCCGGTCCGGACAGCCAAAGCAGTGATCGCCGAGCCCTGGTGAGCAGTGAGCAGCATGGAGGAGCCCAGGAGCCCCAGGAAAGCGGTCAAGCCTTCCCGTAACGAGGCCAGGGGAGGCAAGGCCGTGTCCTCTAGGTACCCGAAGGAGGCCCCCGCGTCCAGGGACTGCACCAAGGCTCTCGgctggaacaacaacaacaacgaggTGGTCAAACCGAGAGTGAGCAAAGAACCCAAGGATACgggaaagcagcagcagcagcagcagccgcagcaGCAGAACAGCCAGCCAGTGAGCAAGAGCCCTGGTTTGGTCCCCCCGGGTCGGGGGAAGAACCACCGGCCGACCGGCAGGAGCAGTCCGgcggagagagggaaggggagagcaggaagGCAGCAGCCGGAGTCCCAGCCACCACAGACCCTGCAGGAGCCCCACACTGAGACGATCCCAGCTCCCGTTAGTGCCTCGGTGGCCGAGAAGCATCCAGAGACCACCAGAGCCGGCACGAGACTGGCGGACCCTCCCCGGCTGTGTGTGGAGGAGAAGGAGTGTAAGGGAGTCTCGGCCACTTCTGTCATGGAGGACAGAGCTCGGACTTTAAGCGAGGAGGCTGAGGGACAGCCGGCCGAGGCTCCCCCGCCGGATAAGCCCGGTGGCGGCGGTGGCGGCGCGGTGATCGATGAGTCCAGTTTGACTACGGAGCAGCAGCTGGGCCTGAAGCAAGCGGAGGAGCGACTGGTGCGGGACTACATTCACCGGCTCGTCAAGCGCTCCCCAGAGTATCCCAACTTCCAGTACCTATGCAAACTGTGCTCGGTGCACATCGAGAACATCCAGGGGGCCCACAAACACATCAAGGAGAAACGGCACAAGAAAAACATCACGGAAAAGCAGGAAGAGAACGAGCTGAGGGCACTGGCCCCTCCGTCGCCGGCCCAGCTGCAGGCGGTCGACGCCGCAGTTCAGGGGGTCGCCAGGGAGCAGGGCATCTCGGAGAGCGACTACGCGGTGCGCCAGGGCATCGTACACAGAATGCAGGGCATCATCCAGCAGCAGCTATCTGCCTGCTCTCTGCGTCTCTACGGCTCCTGTCTCACCAGGTTCGCCTTCAAAACCAGCGACGTCAACATCGATGTCAGCTTCCCCCCCAGCATGACTCAACCAGACGTGCTAATACGGGTACTGGAGATCCTCAAAAACAGCTCTCAGTACAGTGACGTCGAGTCTGACTTCCACGCCAAAGTTCCCGTCGTGTACTGCAGGGATAAAAGCAGTGGGCTGCTGTGCAAAGTCAGCGCCGGGAATGACGTTGCCTGCCTCACCACCAACCTGCTGGCGACTCTGGCCCGGCTGGAGCCCAGACTGGTCCCGCTGGTGCTGGCCTTCCGGTACTGGGCAAAGCTCTGCCACATCGATTGCCAGGCCGAGGGGGGCGTCCCGTCCTACTCCTTCTCCCTCATGGTCGTCTTCTTCCTGCAGCAGCGGAAGGAGCCGGTCCTCCCCGTGTACCTGGGCAAATGGATCGAGGGCTTTGACATGAAGCAGATGGACGAGTACCACCTGAAGGGCGTGGAGGGGGACCGCTTCGCCGTGTGGGAGCACCGGCCATCCGGCAATGGAGAGGGCAAGAGCGACGGCAAGGCCAGGGTGGAGCAGAAGAAGGCGCCGGGCAAGAAGGCGGAGAGTTCGGATAACCGCAAAGCCAAGCCCAGGACCGGCAAGACTCCGCTGGCGCTGGACTCCCGACCCGAGGCGTCTCTGGGGCAGCTGTGGCTGGAGCTGCTGCGCTTCTACACCCTGGATTTCGCCCTGGAGGAGCACATCGTCAGCATTCGCCTAAGAGAGCGGCTGTCCCGAGAGGTGAAGAACTGGCCCCGGAGGAGGCTGGCCATCGAGGACCCATTTGCACTAAAGAGAAACGTGGCGCGCAGCCTCAACAGCCAGATGGTGTTCGAGTACATCCTGGAGCGCTTCCGCACGGCCTACAAGTACTTCGCCTGCCCTCAGAGCAAGGAGGGGACCCTCAGGGGACGACAGAGGGGCAACTGCAGGGGGAGGCATGGGAGGAAGAAGGGCAGAAGGGTGGGGGACGGCGCGCAGGACGGCAAGGAGGGCAGAGACGCTGAGCAGAGGctggaggaggacgaggaggaggaggaggacgacgacgactctgaggaagaggaggaccGGCTCAGTGATGAGGGGGTTCTGGCCGAGGGTTTTACGGACTTGGTCCTGAGCGACGGAGAAGAAGGCCAGTCGGAGGCCGCCAGCGCTGGGAAGGACCCGAGTGCCGGGGACCGACCCGCCGGGCGGTGTGGCTCGGCCGCATCCCGGGAGCTCGGCCAGGGGGACCGCCTGGCCCCCGGGTCTGCATCTACCTCACACAACGGGTCGGCCGAGAACGGGCTGCCCGAGAGCGACGAGGACGAGAGGCCCCCCAAAGTGGCCGAGCCGATCGCCCCTGAGGACTTGTACTACATCTTCGACCGGTTAATCTTCACCGGAGGAAAGCCACCCACGGTGGTCTGCAGCATCTGCAAGCGGGACGGACACTTGAAAGACGAGTGTCCCGAGGACTTCAAGAAGATTGACCTGAAGCCGCTGCCGCCCATGACGGACAGATTCCGCGACATTCTGGACGGGCTGTGCAGGATGTGTTACGATGAGTTGTCCCCCCTCCCAGTGGAGCAGCAGAAGAGAGAGCAGATCCTGGCCAGTCTGGAGAGGTTTATACGCAAGGAGTACAACGAAAAGGCCCGGCTGTGTCTGTTTGGCTCCTCCAAGAACGGCTTTGGTTTCCGGGACAGTGACCTGGACATCTGCATGACTCTGGAGGGTCACGACACTGCAGAGAAACTGAACTGTAAAGAAATCATCGAAGGCTTGGCGAAGGTCCTAAAGAAACATGCAGGTCTGAGAAACATCTTGCCTATCACCACCGCTAAAGTGCCTATAGTCAAATTTGAACACCGAGTGAGTGGCTTGGAAGGAGACATAAGCCTGTACAACACACTGGCACAGCACAACACCAGGATGCTGGCGACGTACGCTGCTATCGACCCTCGGGTGCAATATTTGGGGTACACAATGAAAGTCTTTGCAAAGCAGAGGAAGCCCCCAGTCATCCCCGTCCTCCAAGAGATATTCGATGGGAGAAGCGTCCCTCAGAGGATGGTGGACGGCTGGAACGCGTTCTTCTTTGATGATATTGAGGAGCTGTCCGCATGTGACGCGGCCGGCCTGTTCCGCTCCCCCCAGAAGAAGCACCTTCCCGAGAGGGGCCGTAACTCCGAGTCGGTGGGTGAGCTGTGGCTGGGCTTGCTGCGCTTCTACACCGAGGAGTTCGACTTCAAGGAGTACGTCATCAGCATCCGGCAGAAGAAGCTGCTGACCACCTTCGAGAAGCAGTGGACCTCCAAGTGCATCGCCATCGAAGATCCCTTTGACTTGAACCACAACCTGGGTGCTGGAGTCTCACGGAAAATGACAAACTTTATCATGAAGGCCTTAATCAATGGAAGGAAGCTGTTCGGGACGCCGTGCTATCCACAGCCCGGGATGGAGGCGGACTACTTCTTCGACTCCAAGGTGCTCACCGATGGCGAACTGGCCCCGAACGACCGGTGCTGCCGCATCTGTGGGAAGATCGGCCACTACATGAAGGACTGTCCCAAGAGACGCAGgatgaagaagaaggagaacGAGAAGGACGAGGACGTGAAGGAGGAGGAGCGCGAGCCGAGGGAACGGCGCTGTTTCCAGTGCGGGGACACGGGCCACGTGCGACGGGACTGTCCCGAGTACCGGCAGCTCCGGCAGCGCAGCACAGTGGGGCCAGTGCCCCCGCTGGTGCGTGCCATGGTCAGCTCCCAGTCCATCCCGGTTCCTCAGCCCGTGACGGCCGCCGCGGATCGACCCGGCAGAACCAGGCAGTCCTCGGAGTGTtCTGAAACGCGTCAGACACCGCCCTACTCCCCGCAGTCGTCCGCCTTCACCCCCGGCAGCTCCCAGCCCTCCAGCTCCCCCCAGGCCCAGTCCGTGGGGGTCTCCTCCCAGGCCAAGGTGGCAGGACCCCCCAAACCGCACTCCCAGGTCCAGCTGCCTCTCTTTAACTTCCACCCCTCGCACCCGGGCCAGTTCCACCCGGGGCTGCCGGCCCTGGGGCTCCTCCAGTCccaccagcagcagcaccaccCCGTGCCCATCCCCTCCACGTCCTGGCCCATCCACGGGCCCATCATGCAGACCCCCTCCGCCGGGGGGCGCCCCTCGCCCCCCGGCCTGGGCTTCCCCCTGCGCTCCGGCCCGGCCAACGGGAACGGCGCTTCCCCCGGCAGCCCAGGCCCCATGAACCTCAACGACCCCAGCATCATCTTCGCCCAGCCGGCCGGCCGCCCCCTGGGGCTGCCCGGGGCGGGGCGCGAGGGGCTCTGGCACAACCATCTGAGTCCGGGGGCACTGGTGGGGAACGGCACGGCGGGGAAGTCAGACCAGGGCTTTCAGGGACAGTTCGGGAAAGGGCATCAGGGCCCGGTGTCCTGGGACCACGGCAGCACGGGGCCGTACTCCCTCTCCTGGCCGTACCGGATGCCTCAGGCCTTCATGCAGCAGGGAAACGGAGGACTGCAGCAACAGAAGCCTTTCATCTCACAAGACTCCATAGAATGA

Function

GO: NA

KEGG:

id description
K13291 TUT; terminal uridylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005252 True 4850 mRNA 0.63 30 19857858 19878152

Neighbor

gene id symbol gene type direction distance location
AMCG00005251 orc1 coding downstream 2649 19846791 ~ 19855209 (-)
AMCG00005249 NA coding downstream 52802 19799734 ~ 19805056 (-)
AMCG00005250 LOC103463064,LOC103355575,LOC104919037,LOC103137203,LOC101157045 coding downstream 58502 19784874 ~ 19799356 (-)
AMCG00005241 NA coding downstream 116493 19726944 ~ 19741365 (-)
AMCG00005229 NA coding downstream 188806 19664101 ~ 19669052 (-)
AMCG00005243 LOC107737066,LOC107384472 coding upstream 28934 19907086 ~ 19916367 (-)
AMCG00005257 NA coding upstream 103382 19981534 ~ 19994664 (-)
AMCG00005259 NA coding upstream 146022 20024174 ~ 20026705 (-)
AMCG00005258 uck2,LOC106584056,LOC105005905,LOC106560433,LOC107731246,LOC107668082 coding upstream 152417 20030569 ~ 20043343 (-)
AMCG00005268 NA coding upstream 242628 20120780 ~ 20126843 (-)
G146358 NA non-coding downstream 82867 19771772 ~ 19774991 (-)
G146348 NA non-coding downstream 100621 19756247 ~ 19757237 (-)
G146347 NA non-coding downstream 103114 19754196 ~ 19754744 (-)
G146322 NA non-coding downstream 125741 19704004 ~ 19732117 (-)
G146315 NA non-coding downstream 246853 19610766 ~ 19611005 (-)
G146461 NA non-coding upstream 171964 20050116 ~ 20052921 (-)
G146469 NA non-coding upstream 184397 20062549 ~ 20063413 (-)
G146487 NA non-coding upstream 229973 20108125 ~ 20109530 (-)
G146503 NA non-coding upstream 267933 20146085 ~ 20147354 (-)
G146576 NA non-coding upstream 643497 20521649 ~ 20523818 (-)
AMCG00005240 NA other downstream 96412 19758232 ~ 19761446 (-)
G146313 NA other downstream 284540 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 833397 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 1093560 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 2311526 17543146 ~ 17546332 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 121015 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 225474 20103626 ~ 20107827 (-)
G146532 NA other upstream 396239 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 437908 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 612899 20491051 ~ 20502206 (-)

Expression


Co-expression Network