AMCG00005253 (tmco1)


Basic Information

Item Value
gene id AMCG00005253
gene name tmco1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20047383 ~ 20051117 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005253
TTTCAGATTCAGTCTAGGGCAGCGGTGTCGCGGCGGTCCGGCACACAGGCACACGGCTGCGGATCCGATACGACTGTGGAAACACGAACACACCCGTGAGGATGAGCACCATGTTCGCGGACACCATCCTGATCGTGTTCATATCCGTGTGCACGGCTCTGCTGGCGGAAGGTATAACGTGGGTGCTGGTCTACAGGACGGACAAGTACAAGAGGCTGAAGGCAGAGGTGGAGAAGCAGAGTAAAAAGCtggagaagaagaaggagaccATCACCGAGTCGGCCGGACgacagcagaagaagaaaatcgAGAGACAGGAGGAGAAGctgaagaacaacaacagagaCCTCTCCATGGTCCGGATGAAGTCCATGTTCGCCATCGGGTTCTGCTTCACCGCTCTGATGGGCATGTTCAACTCCATATTCGACGGCCGCGTTGTGGCCAAGCTGCCCTTCGTGCCCCTGTCCTACATCCAGGGCCTGTCTCACCGCAACCTGCTGGGCGAGGACTACACGGACTGCTCCTTCATCTTCCTCTACATCCTCTGCACCATGTCCATCAGACAGAACATCCAGAAGATGCTGGGTCTGGCTCCGTCCCGCGCGGCCACCAAACAGGCCGGGGGTTTCCTGGGGCCGCCGCCGCAGGCTGCCAAGTTCTCGTAACCCTGCGCCGTGGTTGCAGCCCAGCCTACACACTGCCAGAGCAGAGAcgggggaggagagagatggagagagagatgggacaGGCTGCCCTCTTCTGTGAAGAACACGAATCACACCCTCGAGTTATTAAACGGTCCAGCTGCTGGACCTGGTGCTACAGACATTTCTGTGCTTTGCCATCGATTTTACCTTTTAGTGTTTCTTATCTGCAGGACTCGAAAGCCCGatggtattgttttttgtaataataaaccGAAATGACCCAGCTTTACCAAGTCCTTGTTAAATTACTGGCATATCAGTACTAGTAGTTTGTCCTACATTGTTTTAAACCGTACAGACAGATTTGTGCATTCAATAATGTGACCTGCAGGCCTAAAAcagtttattgttattattcatgttCTTAAACTATGTCAGTCTTTTACAAGGAGCCACTCTTAGGAGCcattttattagtttaataaCCGACCTGTTTGTTAGAGGTAACCGAACACTCAGCTCGTGTATCTGTCCGTCTGTGGGACAACGCACCGGACTACTGCAGCAGAAAGCCGTGGCCGGGGGGGCAGGTATATGGCTGAGTCGTCTGTGTTTTTCCTCCCCCATGTGTGATTTTATTAGTCTGTTCCCTTCCCAGAGGTACTTATTAAATGAagatacatgttttaataaataaactaaggaagaaaaacaaaagaggagGTCCCCATAAGTGTTGTGTGTTCATTGTGTCAGAAGAAATGATCCATTACCGATGCTCCACTCATATTCAGAGTGCTGAACACACTGCACCGTGTGGACTGTTTTTGGAATCTGAAATTGAATATTTCAGGTGTGAGTATTGGGATATGGAGGGCGGGAATATTATAGGAATTCTGAGCCCTATAAACGACATGCTATGGAAC

Function

symbol description
tmco1 Predicted to enable calcium channel activity. Involved in calcium ion transmembrane transport and endoplasmic reticulum calcium ion homeostasis. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; hatching gland; lens; polster; and solid lens vesicle. Orthologous to human TMCO1 (transmembrane and coiled-coil domains 1).

NR:

description
PREDICTED: transmembrane and coiled-coil domain-containing protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K21891 TMCO1; calcium load-activated calcium channel

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005253 True 1576 mRNA 0.50 7 20047383 20051117

Neighbor

gene id symbol gene type direction distance location
AMCG00005254 NA coding upstream 27862 20015938 ~ 20019521 (+)
AMCG00005242 slc1a7,LOC106600499,LOC105022788,LOC105925312 coding upstream 70307 19967679 ~ 19977076 (+)
AMCG00005244 NA coding upstream 93717 19935353 ~ 19953666 (+)
AMCG00005247 gpx7 coding upstream 162832 19879542 ~ 19884551 (+)
AMCG00005245 prpf38a,LOC107731643,LOC107684051,LOC107725199 coding upstream 188769 19855589 ~ 19858614 (+)
AMCG00005255 aldh9a1a.1,LOC102301203,LOC106676834 coding downstream 832 20051949 ~ 20063397 (+)
AMCG00005262 akr1a1,akr1a1b,LOC107725198 coding downstream 78112 20129229 ~ 20139948 (+)
AMCG00005261 nasp,LOC107551040,LOC107731628 coding downstream 90105 20141222 ~ 20148284 (+)
AMCG00005260 NA coding downstream 121616 20172733 ~ 20175331 (+)
AMCG00005273 mast2 coding downstream 157674 20208791 ~ 20209457 (+)
G146450 NA non-coding upstream 21322 20024173 ~ 20026061 (+)
G146442 NA non-coding upstream 36248 20007416 ~ 20011135 (+)
G146350 NA non-coding upstream 286592 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 454289 19592750 ~ 19593094 (+)
G146306 NA non-coding upstream 461727 19585448 ~ 19585656 (+)
G146486 NA non-coding downstream 56985 20108102 ~ 20109541 (+)
G146544 NA non-coding downstream 264890 20316007 ~ 20333122 (+)
G146590 NA non-coding downstream 591151 20642268 ~ 20655773 (+)
G146591 NA non-coding downstream 591655 20642772 ~ 20712220 (+)
G146599 NA non-coding downstream 631508 20682625 ~ 20738321 (+)
G146305 NA other upstream 467576 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 516930 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1225741 18815029 ~ 18821642 (+)
G145932 NA other upstream 2275858 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4662572 15379599 ~ 15384811 (+)
G146519 NA other downstream 131237 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 201892 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 470532 20521649 ~ 20524819 (+)
G146596 NA other downstream 610809 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 648369 20699486 ~ 20702472 (+)

Expression


Co-expression Network