AMCG00005254


Basic Information

Item Value
gene id AMCG00005254
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20015938 ~ 20019521 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005254
ATGGCACGTTTACTAGCCGCGCAGGTGCATTGGTTTGGGGGCAGATCTGGGAGTTTCGCCCCCTTGAGCAGGGTGGTCTCCGGCTCTGTGGGGTCCAGCCGGCGGACTTACGGCAGCAGAGATGGGCCGGGGTCCGATTACCTGCACAGGAGCGTCGTTCCCACAATGCACTACCAGAAGAGTTTGCCCAGCAACACTGAGCAGCTGGCCCACAGCTTCCAGAGCGGGGCAGGGAAGGAGCTGCATGAGGAGCTGGTGGCCAAGGACAAGAAGAACAAGCACACCAGCTACATCTCTGCGCCTTGGTTTGACATGTACCTGTCAGCGCGGGAGCCCGTTGTGCTGAACTTCAACCCCTTCATGTCCTTCAACCCCGACCCAAAGCCGGAGTACAACGACCAGCTGCTGAGGGCCACCAACATGACAGCGTCGGCTGTGCGCTTCATGAAGACGCTGCGCGCCGGAGTCCTGGAGCCCGAGGTGTTCCACCTGAACCCGGCCAAGAGCGACACGAACGGCTTCAAGAGGCTCATCCGCTGGGTGCCGCCCTCGCTCTCCTGGTACGGCGCCTACATGGTGAACGCCTACCCCCTGGACATGTCCCAGTACTTCCGCCTGTTTAACTCCACCCGCATCCCCAGGCCGGGCCGGGACGAGCTGTTCACCGACAGCCGGGGCAGACACCTGCTGGTCATGCGCAAGGGGCACATGTACGTGTTTGACGTCCTGGACCACGACGGGAACCCAGTGCAGCCCGCGGACATCCACGCCCACCTCAAGTTCATCCTGTCGGACGCGACCCCGCCGCCTGCACTACCCCTGGGCTTCCTGAGCAGCGAGAACCGGGACGTGTGGGCCGGGCTGCGGCAGAAGCTGCTGGAGGCGGGCAACGAGGCAGCGCTGGCGCAGGTGGACAGCGCCCTGTTCTGCCTGTGCCTGGATGACGAGCCCATGAGGGACCACATCCACACGTCCCACAACATGCTGCACGGTGATGGCAGCAACCGCTGGTTCGACAAGTCCTTTAGCATCATCATGGCTGCGGACGGGGAGGCGGCCATCAACTTCGAGCACTCGTGGGGCGACGGGGTGGCCGTGCTGCGCTTCCAGAATGAGGTCTTCAAGGATTCCACGGAGCGGCCCCTCGTCGGCCCCCAGTCCATCCCCGCGGCCACAGCCGACTCGTCCGCCGCAGTCCACCGGCTGGAGTTCAAGCTGGACGGCGCGCTGCGGGACGGCATCGCCAAGGCCAAGGACAACTTCCGGGCGGCCACCTCCAAGCTCTCCATCGACGCCATGGAGTTCAAGAGCGGGGGCAAGGAGGCGCTGAAGAGGAAGAAGCTGAGTCCCGACGCCGTGTCCCAGCTGGCCTTCCAGATGGGCTTCCTCCGGCAGTACGGGCAGACTGTGGCCACCTACGAGTCCTGCAGCACCGCCGCTTTCCGGCATGGCCGCACCGAGACCATCCGCCCGGCCACCGTGCACACGCAGCGCTGCGCCAACGCCTTCGTCCGCCAGCCGGGCAAGCACAACCTGGACGAGCTGCGCGGCATGCTGCAGGACTGCTCCAAGTACCACGGGCAGCTCACCAGGGAGGCCGCCATGGGCCAAGGGTTTGACCGGCACTTGTTTGCCATGCGGTACCTCGCCAATTCCAAAGGCCAGGCCCTGCCCAGTCTCTATCAGGACCCGGCCTACGCAGCCATCAACCACAACATCCTGTCCACCAGCACCCTGACCAGCCCGGCGGTCAGCCTGGGGGGGTTTGCCCCGGTGGTCCCCGACGGGTTCGGCGTGGGCTACGGTGTCCATGATGACTGGATCGGCTGCAACGTCTCCAGCTACCCCTCCCGCAACGTGCACGAGTTCCTGCAGTGCGTTCACAAGTCTCTGGAGGACATCTTCGGCGTCCTGGAGGGGAAGCCCATCAGCTAg

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004095 carnitine O-palmitoyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005254 True 1935 mRNA 0.65 4 20015938 20019521

Neighbor

gene id symbol gene type direction distance location
AMCG00005242 slc1a7,LOC106600499,LOC105022788,LOC105925312 coding upstream 38862 19967679 ~ 19977076 (+)
AMCG00005244 NA coding upstream 62272 19935353 ~ 19953666 (+)
AMCG00005247 gpx7 coding upstream 131387 19879542 ~ 19884551 (+)
AMCG00005245 prpf38a,LOC107731643,LOC107684051,LOC107725199 coding upstream 157324 19855589 ~ 19858614 (+)
AMCG00005248 NA coding upstream 170622 19837762 ~ 19845316 (+)
AMCG00005253 tmco1 coding downstream 27862 20047383 ~ 20051117 (+)
AMCG00005255 aldh9a1a.1,LOC102301203,LOC106676834 coding downstream 32428 20051949 ~ 20063397 (+)
AMCG00005262 akr1a1,akr1a1b,LOC107725198 coding downstream 109708 20129229 ~ 20139948 (+)
AMCG00005261 nasp,LOC107551040,LOC107731628 coding downstream 121701 20141222 ~ 20148284 (+)
AMCG00005260 NA coding downstream 153212 20172733 ~ 20175331 (+)
G146442 NA non-coding upstream 4803 20007416 ~ 20011135 (+)
G146350 NA non-coding upstream 255147 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 422844 19592750 ~ 19593094 (+)
G146306 NA non-coding upstream 430282 19585448 ~ 19585656 (+)
G146304 NA non-coding upstream 440364 19573323 ~ 19575574 (+)
G146450 NA non-coding downstream 4652 20024173 ~ 20026061 (+)
G146486 NA non-coding downstream 88581 20108102 ~ 20109541 (+)
G146544 NA non-coding downstream 296486 20316007 ~ 20333122 (+)
G146590 NA non-coding downstream 622747 20642268 ~ 20655773 (+)
G146591 NA non-coding downstream 623251 20642772 ~ 20712220 (+)
G146305 NA other upstream 436131 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 485485 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1194296 18815029 ~ 18821642 (+)
G145932 NA other upstream 2244413 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4631127 15379599 ~ 15384811 (+)
G146519 NA other downstream 162833 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 233488 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 502128 20521649 ~ 20524819 (+)
G146596 NA other downstream 642405 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 679965 20699486 ~ 20702472 (+)

Expression


Co-expression Network