AMCG00005255 (aldh9a1a.1,LOC102301203,LOC106676834)


Basic Information

Item Value
gene id AMCG00005255
gene name aldh9a1a.1,LOC102301203,LOC106676834
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20051949 ~ 20063397 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005255
AAGCAGCACAACGtctctttaaataatacaaatcacgATCTAATCTAACCTGCTATGTGTCTAATGTCTTACGTGGTGAAGTGCGCCCCAGTGCAGCCGTGCATTGGTGCACTTTATACACGAGCCCTGCCGTCCTGGTGCAAAGTGCGGCTTGTCCCGTATATAGGAGGCAGTGGAGATCATTAACtgctctgcgcagatctgctcTTGAAGCTGAAGGCAGCGGTAGGCGCTCTTTGAAGCCACTCTTCTCCGTGTCCAGCACCGCGCATCCGAGCCGGCCGGCCCAGACCACCATGGAGATCCTCCGCACTCCGCTGCTGGCTTCTGCCGCCATCCGCAGCGCCTCCACCGGCACGCTGGAGGTGAAGGAGCCGCTGAACTTCTGGGGCGGAGGCCGGGTGAAGCCGTCCAGCAAGGACGCCAAGCCCAGCGAGGCGGTGTGCGAGCCGGCCACAGGACGGGTGCTGTGTCACATGGTACCCTGCGGGGCCCAGGAGGTGGACCAGGCCATCCAGAGCGCCCAGTCGGCCTTCCTCAAGTGGAGCAAGCTGTCCGGCATGGAGAGGGCGCGCATCATGCTGGAGGCGGCCCGCATCATCCGGGAGCAGAGAGAAGACATCGCCAAGGTGGAGGTCATCAACAACGGCAAGTCCATCAGCGAGGCACTCGTGGACATCGACATCGCCTGGCAGAGCATCGAGTACTACGCGGGCATCGCCGGCACGCTGGCAGGCCAGCACGTCCAGCTGCCAGGGGGCACGTTCGCGTACACTCGCCGGGAGCCcctgggggtgtgtgtgggcATCGGCGCCTGGAACTACCCCTTCCAGATCGCTGCCTGGAAGTCGGCCCCCGCTCTGGCCTGCGGGAATGCCATGGTGTTCAAGCCGTCTCCCATGACCCCGGTCACCGCTGTGATGCTGGCGGAGATCTACGCACAGGCGGGCGTCCCTGAGGGGCTTTTCAACGTGGTGCAGGGCGGCGCCGAGACGGGCAGCCTTCTGTGCCAGCACCCGGGCGTGGCCAAGGTGTCTTTCACGGGCAGCGTCCCCACCGGAAAGAAGATCATGGAGATGTCATCGAAGGGCGTGAAGCCGGTGACCCTGGAGCTTGGGGGGAAATCCCCCCTGATCATCTTCAGCGACTGTGAGCTGGACAACGCTGTGAAGGGCGCCCTCAATGCCAACTACCTGTCCCAGGGCGAGGTCTGCTGCAACGGGACGCGCGTGTTTGTGCAGAGGGACATCCTGCCCGCCTTCCTGGAGCAGGTGGTGAAGCGGACCAAGGCCATCAAGGTGGGGGACCCCCTGCTGGACGACACCAGGATGGGGGCCTTGATCAGCCGGCCGCACCTGGACCGCGTGCTGGGCTTCGTCACCCAGGCCAAGAAGGAGGGGGCCAGGGTCCTGTGTGGAGGGGAGCCGTTTATCCCCAGTGACCCCAAACTGAAGGGAGGGTACTTCATGTCCCCCTGTGTGCTGGaCAACTGCAGCGACACCATGACCTGCGTGAAGGAGGAGATCTTCGGCCCGGTGATGTCCGTGCTGCCCTTCGACACCGAGGAGGAGGTCCTGCAGAGAGCGAACAACACCACCTTCGGCCTGGCCTCGGGCGTCTTCACCAGGGACATTTCACGTGCACATCGTGTGGCTGCGAACCTGCAGGCAGGGACCTGCTTCATCAACAACTACAACATCAGCCCCGTGGAGCTGCCGTTCGGAGGGTACAAGATGTCAGgcttcGGCCGGGAGAACGGCACGGTGACCATCGAGTATTACTCCCAGCTGAAGACCGTCATCGTGGAGATGGGCGACGTGGACTGCCAGTTCTAGGCGTTTCTCCGTGCTTCCCTCAGAAGGCTGCTGAGGAGAAATACACTACTTAATTGTACGCATATTCCTACACGCAATCGGACCGTAACTAGTTTTTATTGGGTCCAGAAGTGGCTAAGATAGTGGGTTTCACACCCAGTGCTTCAATTCCTGCTTTTCTATAGAATCCTGTAGCCCTGGCTGTGCTTGGTCACGGGTGTATGGGCCCTGGCTGTGATTGGTCACGGGTGTATGGGCCCTGGCTGTGATTGGTCACGGGTGTATGGGCCCTGGCCCTGATTGGTCACCACATTCTAAATTCTGGACCAGAAAATGCAATACAGATCAAAGCAACCAGTGATTTTTAAGCATTTCAGGAACTAAGTGAATTGGGCTGTTTcggtctctctttctctgagtAGAAATAGCCCAAGACTCATCCATCTCTACCTTTCAGCGATTTTGATTCAGTATTCAGGAGTATAAATGATCCCTTctttccctgcctctctctcacactctctctctctctttgaatcAAACTCTTCCTTCATGGTTGAGAATCCAAACTGTGAATCACACCTCCTGCGCTTTCTGGTCCTCGGAGATTTAATTTGCCCTACCGGCTCTGTCCCGCCTCGCCACCCCCCTCGGGACTCTCTATACTCCCAAGAGCCTCGTTTTGAATTACAAGTTGATTTGTTtaacacagtttattttgttttgtatcaagCACTGCTTTACCTGAATAAATATCACAGTTACTAACGGACAA

Function

symbol description
aldh9a1a.1 Predicted to enable 4-trimethylammoniobutyraldehyde dehydrogenase activity and aminobutyraldehyde dehydrogenase activity. Predicted to be involved in cellular aldehyde metabolic process and protein homotetramerization. Predicted to be located in cytosol. Is expressed in gut; head mesenchyme; intestinal bulb; and liver. Orthologous to human ALDH9A1 (aldehyde dehydrogenase 9 family member A1).

NR:

description
PREDICTED: aldehyde dehydrogenase family 9 member A1 isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004029 aldehyde dehydrogenase (NAD+) activity molecular_function

KEGG:

id description
K00149 ALDH9A1; aldehyde dehydrogenase family 9 member A1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005255 True 2589 mRNA 0.58 12 20051949 20063397

Neighbor

gene id symbol gene type direction distance location
AMCG00005253 tmco1 coding upstream 832 20047383 ~ 20051117 (+)
AMCG00005254 NA coding upstream 32428 20015938 ~ 20019521 (+)
AMCG00005242 slc1a7,LOC106600499,LOC105022788,LOC105925312 coding upstream 74873 19967679 ~ 19977076 (+)
AMCG00005244 NA coding upstream 98283 19935353 ~ 19953666 (+)
AMCG00005247 gpx7 coding upstream 167398 19879542 ~ 19884551 (+)
AMCG00005262 akr1a1,akr1a1b,LOC107725198 coding downstream 65832 20129229 ~ 20139948 (+)
AMCG00005261 nasp,LOC107551040,LOC107731628 coding downstream 77825 20141222 ~ 20148284 (+)
AMCG00005260 NA coding downstream 109336 20172733 ~ 20175331 (+)
AMCG00005273 mast2 coding downstream 145394 20208791 ~ 20209457 (+)
AMCG00005274 NA coding downstream 421535 20484932 ~ 20489664 (+)
G146450 NA non-coding upstream 25888 20024173 ~ 20026061 (+)
G146442 NA non-coding upstream 40814 20007416 ~ 20011135 (+)
G146350 NA non-coding upstream 291158 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 458855 19592750 ~ 19593094 (+)
G146306 NA non-coding upstream 466293 19585448 ~ 19585656 (+)
G146486 NA non-coding downstream 44705 20108102 ~ 20109541 (+)
G146544 NA non-coding downstream 252610 20316007 ~ 20333122 (+)
G146590 NA non-coding downstream 578871 20642268 ~ 20655773 (+)
G146591 NA non-coding downstream 579375 20642772 ~ 20712220 (+)
G146599 NA non-coding downstream 619228 20682625 ~ 20738321 (+)
G146305 NA other upstream 472142 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 521496 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1230307 18815029 ~ 18821642 (+)
G145932 NA other upstream 2280424 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4667138 15379599 ~ 15384811 (+)
G146519 NA other downstream 118957 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 189612 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 458252 20521649 ~ 20524819 (+)
G146596 NA other downstream 598529 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 636089 20699486 ~ 20702472 (+)

Expression


Co-expression Network