AMCG00005257


Basic Information

Item Value
gene id AMCG00005257
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19981534 ~ 19994664 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005257
TGCAAAGGCTCTCGTGACGATAGTGGCGCGCTGTCTGTCGAGTTCAGGACATCTTCCTCTCCTGACATGGGACTGTTTTCTGTGGCTTTGAAAATCACACTTTATCACTTCTTTCACCACTAAAAGATTGCTGCTGGCAGGTAGGGGCCCTTTTTGTTTCGACGACGCTTTTGGGAAAGGGACCCTGGCTGAAGACGCGTGAGTGGGGTTCGAGAGGGGCTAGCTCCCTACAGCGTGGCCCGGACCGAGCATGGTTCTGCACCGGAAGCACTTGCTGGCGCTGTGTGCGCTGGTACTGAGCTGGGGGCTGATGCAGTGCCAGAcggagctggaggaggaagaggaggaggaggatgaggaggaagaggaggaggaaggtgaGGGGATGGCAGGCAGGGTGACGGTGCCTCCCGCTGTGGTGGTCCTGCCGGAGGACTGCCCGCCGGACTGCACCTGCTCTCCGGAGGGGTTGGTGGACTGTGCTGGCGTGGACTTGGACCACTTCCCTGGTAGCCTGCCTCTGTCCACGCGCCACCTGTCCCTGCAGAACAACCAGATCCGGGAGGTGTTTGTGGACGAGCTGTCGCGGCTCTTCAGGCTGGAGACGCTCAACCTGCAGAACAACAAGCTCACCTCCCACGGCCTGGAAGACGAGGCGTTTGTACTTCTGGACCACCTGAGCTATTTGTACTTGGCAAACAACAAGCTCACCACTGCCCCCATGCACCTACCCCCCTCGCTGGTCAGCGCAGACTTCGCAGCCAACCAGTTGACCAAGATCTACCCCTATACCTTTGGTCAGAAGCCAGGACTGAAGTCTGTGTATCTCCACAACAACAAGCTGACCGACGCTGGACTTCCTGACCAGATGTTTAAGGGCTCGGACAACCTGGAGGTCCTCATCATGTCCAGCAACTTCCTCCGATACGTGCCCCAGAACCTGCCCTCTGCTCTGTATCGCCTCCACCTAAAGAATAACAAGCTGGAGAAGATCCCCAAGGGAGCCTTTGACAACCTGTCCAATTTGCGGGAGCTGTACCTGCAGAACAACCTGCTGAGCAATGACGGGATGGACAACGAGACCTTCAGCAACCTGAACAGCCTGGAGTATCTGGACCTGTCCAACAACAACCTGAGCGTGGTCCCCAAGGGCCTGCCCCGCAATCTGGTCCTGTTGCACCTGGAGAAGAACGCCATCGAGAGCATCCCGGGAGACACCCTCACGCCCATCCGCAACCTGGAGTACCTGCTGCTGCACAACAACCGGCTACGCTCACGCCTCATCGACCCACAGGCCTTCCAGGGGCTGAAGAAGCTGCACACGCTGCACATGTACAACAACCGGCTGGAGCGTGTGCCCAAGGGCATGCCGCGCCGCGCCAAGACGCTCATGCTGCTGCACAACCTCATCTCCGAGATCGGCCGCAATGACCTGGCCACGCTCTACACGCTGACCGAGCTCAACCTCAGCTACAACCGGCTCACCAGCCCCCGTGTGCACAAGGAGGCCTTCCGCAAGCTGCGCCTGCTGGAGTCGCTCGATCTTTCGGGCAACCAACTCCACACACTGCCCGCTGGCCTGCCCAAGAGCCTGCAGGTGCTGAAGGTCAAGGACAACCAGCTGACCGCCATTCCTGACCGCGCCCTGTCCGGCATGACCAAGCTGCGCGAGATCAACCTCAGCAACAACCAGCTCAAGACGCTGGACCTGTCTGGAAACCAGCTGTCCCACGTGCCCTCTGACCTCCCAGAGTCCCTGGAGTACCTGTATCTGCAGCACAATCGGATTAGCACCATTCCCGAGGGAGTCTTCGACAGCACGCCCAACATCAAGCGCATCTTCCTCAGgTTTAACCGTCTCTCTGCCGACATATTTGAAGAGCGCTACTTCGCCAAACTGAGGCACGTGCTGGACATCGGGCCCTCCTccgagagggaggaagaggaggaagaagttGAGGAGATGGATGTGCACAGATAGCTATCGGCTTGGACGTCAGCCACACTCCACCTAGCCACTGACCGCCTTTATTCAAGGTTCTAGTTTGCTTAATTCGAGGAGACCGTGTGGGATCCTGCCACCCACGCCCCCTGCCTGTTTACCCCACTGCCCCGACTGCGGCTCCACTTTTCTCAGACCTCTCAGCCCCCAGACACGCACAGCACACCCCGGCATACCTGTGTCCCCTCTCATTGCTAAAAGGGGAAGTATGCCACCGATGGGAACGATGCGAAATATCTCCCACTTCATGCTGAAGCCAAAGAGTTGCGCCACAAACTAGCGGCACAATCGAATCTTTCGGCACCTCATATGAGCACCAAATGGATGAGGTTAGCATTGAGAATGTTTTCAACGAATGGAGAAACTGGGACATTTGCAtgagctgttttttgttgtgtctATAATGGGtcccagatttgtttttattttccgcatgatgattttttgtttgttcaagtGAAGAAATGATTTGTtaaatagacaaacaaaatCCAGCAAAGAATGGAGACTGAAAAAGCAGTATGAAAAGGATTTCTATTTGGTGCAGGATGCCAAATACGTGTTTGCCTTTTATTACCGTTACATTGTTTCCTTGCGCTTgcatgactatttatttaaaataaataaattctgtaGCATTTGCAATACGTCTACACGGGCACCGCCCAGAATCATACAGCGCAGCGCTTCTCTCTGTAATCGGGCACAAGTCTCGTCTCCGTCGTCGCCTTATTGGAAATTGATTTTTTCGACTGTCTGAAGAGCACTGAGCAGAATCTGCCCGACGTGTGTtgtgaaaggaaaaacacaacccccccactgGCCAGCTGTGTCAATCCTAAAGTGAAATAGCCCCCGAGAACCTGTGAATTGAGCACTGACACCTGCTTCAGTGGAGCTGGGGGACCAAGAGACAGTTGACAATCAGCAGCCAAACCACTTCGCTGATTCCATACAGCCGCTCCTTAAAGTTAAATACTCTCCGCTCCTATTTTCACACTTTAACTGGCTTAAGGTTAGATACGGTTACTTTGTTTTGCGCTGCAGTGCAAATAtgattttgttgtctttttgctGCTGAAGAAATCTCTTtcgcatttttttttgtttattttcaatgtttttctcaaattttatcattcagtttgttttgttttggtctcaacattttaagatataaagtttatattttttttatggtcCACTATATGAAAATACTCCCTCACCAAGTACTACGAAAGTACTACGCGTATCTCACGTTGACATTTACGATGGAAAGTGTTATTATTCCgcaataaattattttgaagaaa

Function

GO: NA

KEGG:

id description
K25037 PODN; podocan

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005257 True 3315 mRNA 0.52 10 19981534 19994664

Neighbor

gene id symbol gene type direction distance location
AMCG00005243 LOC107737066,LOC107384472 coding downstream 65167 19907086 ~ 19916367 (-)
AMCG00005252 NA coding downstream 103382 19857858 ~ 19878152 (-)
AMCG00005251 orc1 coding downstream 126325 19846791 ~ 19855209 (-)
AMCG00005249 NA coding downstream 176478 19799734 ~ 19805056 (-)
AMCG00005250 LOC103463064,LOC103355575,LOC104919037,LOC103137203,LOC101157045 coding downstream 182178 19784874 ~ 19799356 (-)
AMCG00005259 NA coding upstream 29510 20024174 ~ 20026705 (-)
AMCG00005258 uck2,LOC106584056,LOC105005905,LOC106560433,LOC107731246,LOC107668082 coding upstream 35905 20030569 ~ 20043343 (-)
AMCG00005268 NA coding upstream 126116 20120780 ~ 20126843 (-)
AMCG00005264 prdx1,tdx,LOC108267618,LOC108430734,LOC105891340,LOC106600402 coding upstream 132495 20127159 ~ 20131739 (-)
AMCG00005269 NA coding upstream 152748 20147412 ~ 20159101 (-)
G146358 NA non-coding downstream 206543 19771772 ~ 19774991 (-)
G146348 NA non-coding downstream 224297 19756247 ~ 19757237 (-)
G146347 NA non-coding downstream 226790 19754196 ~ 19754744 (-)
G146322 NA non-coding downstream 249417 19704004 ~ 19732117 (-)
G146315 NA non-coding downstream 370529 19610766 ~ 19611005 (-)
G146461 NA non-coding upstream 55452 20050116 ~ 20052921 (-)
G146469 NA non-coding upstream 67885 20062549 ~ 20063413 (-)
G146487 NA non-coding upstream 113461 20108125 ~ 20109530 (-)
G146503 NA non-coding upstream 151421 20146085 ~ 20147354 (-)
G146576 NA non-coding upstream 526985 20521649 ~ 20523818 (-)
AMCG00005240 NA other downstream 220088 19758232 ~ 19761446 (-)
G146313 NA other downstream 408216 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 957073 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 1217236 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 2435202 17543146 ~ 17546332 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 4503 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 108962 20103626 ~ 20107827 (-)
G146532 NA other upstream 279727 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 321396 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 496387 20491051 ~ 20502206 (-)

Expression


Co-expression Network