AMCG00005260


Basic Information

Item Value
gene id AMCG00005260
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20172733 ~ 20175331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005260
ATGGCCGCGGCGCAGGCGGTGTCCCGGCGTGCGAGGCCGGCGAGGTGCGTGTCGGTGCCCCGGGAGCCCCGCTGCCCGTCCCTCGAATTCACGGCGTTCGAAGTTCGAGGGGAAGTTCCCCGGCGGCGGAACCGATCTGACGCGGCTGCGCGGTGTAGTCGGACAGTAAAGGCCGGCGCTCCGCTGTCGGCCCGTGTGTTGGGAGGTGtttttaaaatgctctCCTGTGTTTTGAAAAGATATTTCGCCACCACTTGCAGGAGCCGGCGCTGGTCAGACCTCCTGCCGCTGCGCTCCGGGGTCTCGGCGTGTGCGGTCCGGGTGTGCCTCCAGCCTGGATACAGACCTCCCTCGCTCCTGCTGGCGAGAGCGCCGGGGGCCCACCTGCTGGGGGCCCGGACCCTCCACTCCACGGGCCCCAGCCATCAGCAGAGACGCggcaggagggaggaggaggagccgcCGAAGCGCGAGCTGGACCTGCTGCGCTACGACATGAAGCGCCTGCTGGAGGCCCCCCGGCCCGCGCTCATCCTGGGCTTCTCCGGGCTCCTGCCCTTCGTCTCCGCCCCGATGGCTATGGCCGCCACCCAGCTCTACCTCCCCGAGGTCGCCTTCGCCCAGGTGGCTTACGGGGCCTGCATCCTGTCCTTCCTGGGCGGGGCGCGCTGGGGATTCGCGCTCCCCGAGGGCAGCCCGGCCAAGCCCGACTGGCTGAACCTGGCCAACAGCGTGGTGCCCGCCTTGCTAGCCTGGGTGGCGCTGCTGTTCGGGGACAACCTGACCGAGGCGAATCTGATGGTCATCATGGGACTGGGCATCGCCCTGCACTACGACCTGGCCCTGCTGCCCACCTACCCCAGCTGGTTCAAGGCCATGCGGACTGTGCTCACCCTGGTGGCCACCTTCTCCCTGGTTGCCACCCTGATCCTGACAAGTGTCTACCCGGAGAAGCGGCTGAGTGCACAGAAGAAATGAGTCAAAATTACTGGGAAACTAAAGAGACCTTTTAAGAAGGGAATAGTGATTGTACAGGAAATACTCGGAGATGTGTTATAGGTGGGAAAGGATGAAAAATGAGAAACCCCAGAGTTTCACGTCTGTGTTGTTGTGTCATCTCTTACAGGGCTGGTCTCACAGACCCGGAtgagcactagtcttggactgcTGGTGCTGTCTCAGGTAGAGCAGTGCCAGACTAGTCCTGATCCAGGTCTGTGACCCCAGTGCACAGGGTGTCTTGGTAGTAAAGGTGGGCAAATAGTAGTGAAGTCTGTGCTGGATTTGGCGGCCGTTTCCTTTGAGTCTCGACTGAAATGGAGGATCGACAGTCCTCTGGGTGGACCGCCCCGGTTCTGAGCTCATCCGCTCAGGGAGACCTTGAAACcgtgggggggggtggagacttcTGATTTGTGATCGAAGTTGTTGTTGTGTAGAAGACTAACACAACCCCCCCGCCCACAACACtgttattatttgatgtttgtaAGCGcaccttgttcttcttcttatattttaaaatattgtggc

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005260 True 1533 mRNA 0.61 4 20172733 20175331

Neighbor

gene id symbol gene type direction distance location
AMCG00005261 nasp,LOC107551040,LOC107731628 coding upstream 24449 20141222 ~ 20148284 (+)
AMCG00005262 akr1a1,akr1a1b,LOC107725198 coding upstream 32785 20129229 ~ 20139948 (+)
AMCG00005255 aldh9a1a.1,LOC102301203,LOC106676834 coding upstream 109336 20051949 ~ 20063397 (+)
AMCG00005253 tmco1 coding upstream 121616 20047383 ~ 20051117 (+)
AMCG00005254 NA coding upstream 153212 20015938 ~ 20019521 (+)
AMCG00005273 mast2 coding downstream 33460 20208791 ~ 20209457 (+)
AMCG00005274 NA coding downstream 309601 20484932 ~ 20489664 (+)
AMCG00005278 NA coding downstream 414415 20589746 ~ 20595754 (+)
AMCG00005279 NA coding downstream 422412 20597743 ~ 20627931 (+)
AMCG00005287 si:ch211-121a2.4,LOC107687197,LOC107581514,LOC103033168,LOC108416079,LOC107712847 coding downstream 565847 20741178 ~ 20742301 (+)
G146486 NA non-coding upstream 63192 20108102 ~ 20109541 (+)
G146450 NA non-coding upstream 146672 20024173 ~ 20026061 (+)
G146442 NA non-coding upstream 161598 20007416 ~ 20011135 (+)
G146350 NA non-coding upstream 411942 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 579639 19592750 ~ 19593094 (+)
G146544 NA non-coding downstream 140676 20316007 ~ 20333122 (+)
G146590 NA non-coding downstream 466937 20642268 ~ 20655773 (+)
G146591 NA non-coding downstream 467441 20642772 ~ 20712220 (+)
G146599 NA non-coding downstream 507294 20682625 ~ 20738321 (+)
G146640 NA non-coding downstream 574973 20750304 ~ 20750938 (+)
G146305 NA other upstream 592926 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 642280 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1351091 18815029 ~ 18821642 (+)
G145932 NA other upstream 2401208 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4787922 15379599 ~ 15384811 (+)
G146519 NA other downstream 7023 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 77678 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 346318 20521649 ~ 20524819 (+)
G146596 NA other downstream 486595 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 524155 20699486 ~ 20702472 (+)

Expression


Co-expression Network