AMCG00005261 (nasp,LOC107551040,LOC107731628)


Basic Information

Item Value
gene id AMCG00005261
gene name nasp,LOC107551040,LOC107731628
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20141222 ~ 20148284 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005261
CACATGCGCATAATATTAATAGACAAAACAAACCCTCTCTATGGTAAACAGGCCGGGCTGAGAGCTGCCATCACACATGGGGTGACACTGTCCCTTTAACTGCATCTCCCGCGTTTTCTTCCCCTTCCTGTCTGTGCGggcaggtcaaaggtcagcGGAAGTGAGGGCTGGTTTCTGTATTTAAAGGCGCCAACAGAGAAGCGGAGGGACGGGGAGACACAACTGCCATCTTTCCACTCACAGCGGCTCCGTGCACACATTCCCTTCGGTAGCTCCCCGCTAAAAAGCACTTTTCACGCCGCGTTTTTATCCGTGTGAACATGCCGGAGGACACCCCCACCGCTTCGGCCGCAGAAAGTGCGGAGGAGCAGCCGTCCGCCTCATCGTCCGGCGCTGCGGACAGCCCCAGTGGTGATGTCATGGAGGAGGCAAAGAAGCTGATCGGCACAGGGAACCGGCACATGGTGATGGGCGACGTGGTGTCTGCGGTCAACGTGTTCCAGGAGGCGTGTGGGATGCTAGCTAAGAAGTATGGGGACACGGCGGATGAGTGCGCTGAGGCTTTCTTCCTGTGTGGGAAGTCCCTGTTAGACTTGGCCAGGATGGAGAACACGGTGCTGGGGAACGCCCTGGACGGGGTCCCCGATGAAGACacggaggagggagagaaggctGACGACTCCAAGATTGAGAGCGCGGACAACCTGGACGAGAAAACCCGGGATGAGCTGCGTGAGCAAGTCTACGATGCCATGGCGGAGAAGGAAAAGACCACTGAGGGGGAGGAGCGTGAGGGGAAGGGTGAACCGAAGGAAGAGAAGGATGCCGAAGGGGAGAAATCCACAGTGGGGGAGACCAAAACACCTGTCAAGGAGGTGGGTGAGGATAAAGCCAAGGCCAAGACCCCCGTGAAGGAGGTGGGTGAGGATAAAGCCAAGGCCAAGACCCCTGTCAAGGAGGTGGCCAAGGGTAAAGCCAAGACCCCTGTCAAGGAGGGGAAGAAGGAAGATGAATCTGCCTCCCCGAAGAAGGAAGAGGtgaaaactgcagaaaaagCCAAGGAGAAGCAGTCTGAGACCAAGAGTGGAGAGGAAGGGGCTGAAGCGAAGGTGGAGGAGGAAAAGGGGGCTGAAGCAGAAAAGGAAGACTCTACGGAGGAGGGGGCAGATGTGGAGATGGAGGAAGGCGAAGATGGTGAAGAAGAGGACGAGGAGGATGACGACGAAGGGGAGGGCACAGCTGAGGACAAGGagagtgaggaagaggaggaggtgggaaATCTGCAGTTGGCCTGGGAGATGCTGGAGGTTGCCAAGGTCATCTACAAAAGGAAGGAGTCCAAGGAAGACCAgctcttggcagcacaggcccACCTCAAGCTGGGAGAAGTTGGTGCTGAGTCGGGGAACTACGCGCAGGCCCTGGAGGACTTCCAGGAGTGCCTGGCCCTCCAGCTGAAGCACCTGCCCAACCACAGCCGCCTGCTGGCCGAGACGCACTACCAGCTGGGCCTCACCTTCGGCTACACCACCCAGTACGACCGCGCCATCAAGCACTTCAGCAGCTCTGTGGAGGTCATCGAGAGACGCCTGGGTGAGTTTCCTCTTGGTTATCTTCATGCCCAGACTGTTGGatttgtgctgctgctgctgctgctgcacttGAGGGCCACAACCCAGCTGGTTGGGGTTATTCTTGCACCTGACTTCGGTCTTCTCCCTGCAGCCATGCTCCAGGAGTCCATCGACAAGGCAGAGGGAGCGGAGAGCACCGCTGAGAAGCAGAAGGAGATGGAGGAGTTGAAACCGCTGCTTCCCGACATCCTGGAGAAGATCGAGGATGCCAAGGAGAGCCAGAAGACTGCTCTCGTGGCCTCGGAGGCCATCCAGCAGACCCTGGCCAGTGCCAGTTCTGGcgccagctccagctcctctgCGTTCACTGGAGAAAACGGCGGCGCGTCTGCTTCTAAAATCCCAGTGAAACCAGCAGAAGCCGCGTCTTCCTCCAAGTCGGCCTCTGACATCTCCCACCTGGTCAGGAAGAAGAGGAAACCCGAGGAGCAGAGCCCGTTAAAGGACAGTGACGCTAAAAAGCCCAAACAGGAGTCCGCGGTTAATGGCAGCGGGGAGTCTGCCGGCAACCGCAATGGCCCCGAGAAGCCCACCGCCCCCGTGGAGAGCTCGGCTGAACTGGGGAGTTTGGGTTTGGGGGGCTGTGAAGGTGCACCCATCTGGGCCTGTGTGGCTGAAGGGGGACGGGCCGCTGGGGAGGCCGAGTGGAGCAGGGCTGCTGATGGCTGTGGGGGGAGGCTGCTGGGATCCAGTGGAGGGTGGGTCGGGGGCTGTAGGAGGATGGGTGCACGGTGTTCAGGTGTGTCCTTCAGGGTCTTGAAGATCAGCTGCAAGGAAACGCAGGGAAGCAGTGAGCTGCATCCTCCCCCGAGCCGCCAGAGGAGCGCTGTGCAGAGATCGTACCTGTGTGAAGCGCACGGACAGCTGCCTTACAAACTCGTCTCTGGGGCGTCCGGTGGGGATCAGCTGGGACAGGGGTGCGGTCGTGGGCTGGGGGCTGTAGGAGTCTCTCTGGTCAAGGGGCAGCTGGGACAGCTGTCCAGCTCCCCGTCCCTCCTGCCGTCTGCGATTCGCACAAACACAGATGCTCCCCTCAGCAGCTGCACCTGGGGGACAGACGGAAAGACCGACTGA

Function

symbol description
nasp Predicted to enable histone binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and DNA replication-dependent nucleosome assembly. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Is expressed in several structures, including eye; immature eye; pectoral fin; pharyngeal arch; and ventricular zone. Orthologous to human NASP (nuclear autoantigenic sperm protein).

NR:

description
PREDICTED: nuclear autoantigenic sperm protein isoform X1

GO: NA

KEGG:

id description
K11291 NASP; nuclear autoantigenic sperm protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005261 True 2708 mRNA 0.60 16 20141222 20148284

Neighbor

gene id symbol gene type direction distance location
AMCG00005262 akr1a1,akr1a1b,LOC107725198 coding upstream 1274 20129229 ~ 20139948 (+)
AMCG00005255 aldh9a1a.1,LOC102301203,LOC106676834 coding upstream 77825 20051949 ~ 20063397 (+)
AMCG00005253 tmco1 coding upstream 90105 20047383 ~ 20051117 (+)
AMCG00005254 NA coding upstream 121701 20015938 ~ 20019521 (+)
AMCG00005242 slc1a7,LOC106600499,LOC105022788,LOC105925312 coding upstream 164146 19967679 ~ 19977076 (+)
AMCG00005260 NA coding downstream 24449 20172733 ~ 20175331 (+)
AMCG00005273 mast2 coding downstream 60507 20208791 ~ 20209457 (+)
AMCG00005274 NA coding downstream 336648 20484932 ~ 20489664 (+)
AMCG00005278 NA coding downstream 441462 20589746 ~ 20595754 (+)
AMCG00005279 NA coding downstream 449459 20597743 ~ 20627931 (+)
G146486 NA non-coding upstream 31681 20108102 ~ 20109541 (+)
G146450 NA non-coding upstream 115161 20024173 ~ 20026061 (+)
G146442 NA non-coding upstream 130087 20007416 ~ 20011135 (+)
G146350 NA non-coding upstream 380431 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 548128 19592750 ~ 19593094 (+)
G146544 NA non-coding downstream 167723 20316007 ~ 20333122 (+)
G146590 NA non-coding downstream 493984 20642268 ~ 20655773 (+)
G146591 NA non-coding downstream 494488 20642772 ~ 20712220 (+)
G146599 NA non-coding downstream 534341 20682625 ~ 20738321 (+)
G146640 NA non-coding downstream 602020 20750304 ~ 20750938 (+)
G146305 NA other upstream 561415 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 610769 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1319580 18815029 ~ 18821642 (+)
G145932 NA other upstream 2369697 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4756411 15379599 ~ 15384811 (+)
G146519 NA other downstream 34070 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 104725 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 373365 20521649 ~ 20524819 (+)
G146596 NA other downstream 513642 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 551202 20699486 ~ 20702472 (+)

Expression


Co-expression Network