AMCG00005262 (akr1a1,akr1a1b,LOC107725198)


Basic Information

Item Value
gene id AMCG00005262
gene name akr1a1,akr1a1b,LOC107725198
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20129229 ~ 20139948 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005262
ATGACTTACAGCCACATCCGACCACAACACAGTGTATTTAGAGCGGGGGGGGAGAACAGCACCTTTCAGCCATTGACCCAATTAGATTCCCTACAACCGGGCAGTCTTGGATTCAAGGCCGGGACTCAAAAGGCCAAGGTCGAGGTCGGGAGCCACAAGGTGCACCGGGCAAGCATGAATGACTTTGCCGTTCTGAGTACGGGCCGGAAGATGCCCCTCATCGGCCTGGGGACGTGGAAGAGTGAGCAGGGGACGGTGAAGCAGGCCGTGAAATGGGCCCTGCAGTCGGGCTACCGGCACATAGACTGCGCCGCCATCTACGGCAACGAGACCGAGATCGGAGAGGCCTTCCAGGAGATGCTCGGGCCGGACAAGGGTCTGCGGCGCGAGGACGTGTTCGTGACGTCCAAGCTGTGGAACACCAAACACCACCCCGAGGATGTGGAGCCCACCCTGCTGAAGACCCTCAAAGACCTGCAGCTGGAGTACCTGGACCTGTACCTCATCCACTGGCCTTACGCCTTCCAGCGCGGGGACGTGACGTTCCCGAGGAAGGAGGATGGCTCCCTGCTGTACGACGACATCGACTACAAGCAGACGTGGGCGGCCATGGAGCGGCTGGTGGGCAAGGGGCTGGTGAGAGCCATCGGACTGTCCAACTTCAACAGCCGCCAGATCGACGACGTCATCGCCGGGGCCAGCATCAAGCCCGCCGTGCTGCAGGTGGAGTGCCACCCTTACCTGGTGCAGTCAGAGCTGTTGGCGCACTGCCGGGACCGCGGCCTGGTGATGACGGCCTACAGCCCCCTGGGCTCCCCGGACCGGTCCTGGAAACACCCCGACGAGCCAGTGACCCAGCGCGGCGTGGTGACGATCCCCAAGAGCGTCACCGAGTCCAGGATCAAGGAGAACATCCAGGTGTTCGACTTCACTCTGGAGGCAGAGGAGATGAAAGCCGTGACGGAGCTGAACAAGGGCTGGCGCTACATCGTGCCCACCATCACGGTGGACGGGAAGTCTGTCCCGAGGGACGCCGGACATCCGCACTACCCCTTCAATGACCCCTATTGACCCCCAGGCAGCCGCCCTCACCGTGCCTTGGGACTCCTGCGCCGCTGACGCCCCCCCGCACTCCTGCCTTACCCCCTGTCcgagaataaagaataaagatcACTCTTTTCTAA

Function

symbol description
akr1a1b Predicted to enable alditol:NADP+ 1-oxidoreductase activity. Predicted to be involved in cellular detoxification of aldehyde. Predicted to be located in apical plasma membrane. Predicted to be active in cytosol. Orthologous to human AKR1A1 (aldo-keto reductase family 1 member A1).
akr1a1 Enables L-glucuronate reductase activity and glucuronolactone reductase activity. Involved in daunorubicin metabolic process and doxorubicin metabolic process. Located in extracellular exosome. Biomarker of breast cancer and lung adenocarcinoma.

NR:

description
PREDICTED: alcohol dehydrogenase [NADP(+)] B isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047939 L-glucuronate reductase activity molecular_function
GO:0004032 alditol molecular_function

KEGG:

id description
K00002 AKR1A1, adh; alcohol dehydrogenase (NADP+)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005262 True 1184 mRNA 0.62 9 20129229 20139948

Neighbor

gene id symbol gene type direction distance location
AMCG00005255 aldh9a1a.1,LOC102301203,LOC106676834 coding upstream 65832 20051949 ~ 20063397 (+)
AMCG00005253 tmco1 coding upstream 78112 20047383 ~ 20051117 (+)
AMCG00005254 NA coding upstream 109708 20015938 ~ 20019521 (+)
AMCG00005242 slc1a7,LOC106600499,LOC105022788,LOC105925312 coding upstream 152153 19967679 ~ 19977076 (+)
AMCG00005244 NA coding upstream 175563 19935353 ~ 19953666 (+)
AMCG00005261 nasp,LOC107551040,LOC107731628 coding downstream 1274 20141222 ~ 20148284 (+)
AMCG00005260 NA coding downstream 32785 20172733 ~ 20175331 (+)
AMCG00005273 mast2 coding downstream 68843 20208791 ~ 20209457 (+)
AMCG00005274 NA coding downstream 344984 20484932 ~ 20489664 (+)
AMCG00005278 NA coding downstream 449798 20589746 ~ 20595754 (+)
G146486 NA non-coding upstream 19688 20108102 ~ 20109541 (+)
G146450 NA non-coding upstream 103168 20024173 ~ 20026061 (+)
G146442 NA non-coding upstream 118094 20007416 ~ 20011135 (+)
G146350 NA non-coding upstream 368438 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 536135 19592750 ~ 19593094 (+)
G146544 NA non-coding downstream 176059 20316007 ~ 20333122 (+)
G146590 NA non-coding downstream 502320 20642268 ~ 20655773 (+)
G146591 NA non-coding downstream 502824 20642772 ~ 20712220 (+)
G146599 NA non-coding downstream 542677 20682625 ~ 20738321 (+)
G146640 NA non-coding downstream 610356 20750304 ~ 20750938 (+)
G146305 NA other upstream 549422 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 598776 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1307587 18815029 ~ 18821642 (+)
G145932 NA other upstream 2357704 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 4744418 15379599 ~ 15384811 (+)
G146519 NA other downstream 42406 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 113061 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 381701 20521649 ~ 20524819 (+)
G146596 NA other downstream 521978 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 559538 20699486 ~ 20702472 (+)

Expression


Co-expression Network