AMCG00005266


Basic Information

Item Value
gene id AMCG00005266
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20182380 ~ 20186437 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005266
GTGGCAACAGGCCTGGACAGCTGGGTTGCCAAACCTCCCAGAATGCCGTTTCCCTGCTGTTAAACAAACCGCTTGACTTATGACCTGGACTGAAGCAAGTGTTGTGCAAAACCGCTGTATAAAGAGCAGCGAAGGGGACTCGACTCCAGCTCAGATACTCAACACCATCACGAGAGACACGGAGCAAACAGggaCTGTGGTAAGATGAAGCTGTATCTGGCTGCCGTGGCGGTTCTGGTCCTGGTGTCCACTGCTCTCTGCCATGAGGACGACAAGTGCCTGGGCGGAGGAAAGCACAAGGCAGTCGCCAGCCGAGAGGAGGGCATGACAGAGTGCTCAATCTATTCCAACTTCGGCCGGCCCGGGCCATTCGGTCACGGTTACCACTTCTCCTCCCTCGCAGCCTCCTGTTGCACCAGCACCTTCACCAAACAGCTCATCTCCCCGGTGAAGGAGGTGGACGGCACCTACTGGAACCGCTGCCAGCAGCCGAGCGAGCGGTGCGAGGCGTTCATGAAGAGGATCGAGTGTTTCTACCAGTGCTCCCCCCACGCCGCCCACTGGATGAACCCCGAATACAACGCAAGCATAGTGAACGTGCCCCTGTGCGCCAGCTTCTGCGATGACTGGTTTGACGCCTGCAAGGACGACCTGACGTGTGCTGGGAACTGGCTCACCGACTACAAATGGGACGCTGATGGCAACCACTGCCAAAGAGACTGTGTGCCCTACAGCCAAATGTACACCAACGGAACGGACCTCTGCACGAACATGTGGGGCGGGTCCTTCAACGTGAGCGAGTCCAACTGCCGCTGCCTGCGGCTGGACGGGctggacgggcaggacgagctGGTGCTGAACTACATTCTGCACCCgggctccagctccagctccagcagctccagcagcagctccgCCGACAGCCAGGAGAAGTCGTGCCAGCGCGCCCTGCGCAGACTGGAGAGGCAGAAGGCTAAGGCAGAGgtggaggcggaggaggagggtCCGGAGTGAGTGCTGGGTCATAGATAGATATTTGAGCCATACATTGGggcagggattcccaaaccgatcctggaggagcccctgtcctgctggtttttgttccaactgagctcataattacataattgagttttattttgcatttttagttcaattaaggattcaattacgCAATTAAGAGCTcatctggaacaaaaaccagcaggctAGTCTCGACCTTTAGATTAGTCCTAATTTGACAGTTAGTCTAATGCAAGTAATTCAGTTGCATGAATTAAGACTGACTAGACTGAGAATTGAAGTCTCTCTTCCCATTGAAACTGCTGCCTGGGACAGACAAGCCTCCCACTGGCTCATACTCCCAAAGtactatatatattgttctgcattatatttcaacaACTATCATAGATCTTCAGTTACTCTAGACTGGGATTGTCGCTGTTTTGGagaacctttctttttttccccccaagtgTCTTACAATTCACACAATGCGTGATTGACcaagtaagaccagtctaaggatgCCTGTTTAATTTCGCTGCATTTCATTGTTATTTCCAAGGTCAGTGGTTCTGAAGATGGAATAAGATCTCATGTCTGTGCTGTAGGGGCCGGACTGACTCCTCTCTGGGGGCCCGACCGCATCAAGACGTTTCTTACAAAGTGTCTTTACCAGACTCACCTTACAAACATCCAGAAATGcaccttttttccttcttcttggcaattaaaacaaagt

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005266 True 1750 mRNA 0.52 6 20182380 20186437

Neighbor

gene id symbol gene type direction distance location
AMCG00005265 ipp coding downstream 1401 20175497 ~ 20180979 (-)
AMCG00005267 LOC106560440 coding downstream 8323 20163351 ~ 20174057 (-)
AMCG00005269 NA coding downstream 23279 20147412 ~ 20159101 (-)
AMCG00005264 prdx1,tdx,LOC108267618,LOC108430734,LOC105891340,LOC106600402 coding downstream 50641 20127159 ~ 20131739 (-)
AMCG00005268 NA coding downstream 55537 20120780 ~ 20126843 (-)
AMCG00005271 NA coding upstream 184231 20370668 ~ 20391561 (-)
AMCG00005277 LOC103468264,LOC108238356,LOC106512499 coding upstream 337609 20524046 ~ 20525301 (-)
AMCG00005275 NA coding upstream 355665 20542102 ~ 20547367 (-)
AMCG00005294 NA coding upstream 453221 20639658 ~ 20643224 (-)
AMCG00005295 NA coding upstream 461119 20647556 ~ 20677947 (-)
G146503 NA non-coding downstream 35026 20146085 ~ 20147354 (-)
G146487 NA non-coding downstream 72850 20108125 ~ 20109530 (-)
G146469 NA non-coding downstream 118967 20062549 ~ 20063413 (-)
G146461 NA non-coding downstream 129459 20050116 ~ 20052921 (-)
G146358 NA non-coding downstream 407389 19771772 ~ 19774991 (-)
G146576 NA non-coding upstream 335212 20521649 ~ 20523818 (-)
G146578 NA non-coding upstream 347931 20534368 ~ 20535200 (-)
G146607 NA non-coding upstream 412802 20599239 ~ 20599503 (-)
G146609 NA non-coding upstream 413737 20600174 ~ 20600514 (-)
G146623 NA non-coding upstream 447687 20634124 ~ 20636209 (-)
AMCG00005263 NA other downstream 74553 20103626 ~ 20107827 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other downstream 158873 19999167 ~ 20023507 (-)
AMCG00005240 NA other downstream 420934 19758232 ~ 19761446 (-)
G146313 NA other downstream 609062 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 1157919 19013077 ~ 19024461 (-)
G146532 NA other upstream 87954 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 129623 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 304614 20491051 ~ 20502206 (-)
G146618 NA other upstream 422917 20609354 ~ 20610643 (-)
AMCG00005333 NA other upstream 1299512 21485949 ~ 21487711 (-)

Expression


Co-expression Network