AMCG00005269



Basic Information


Item Value
gene id AMCG00005269
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20147412 ~ 20159101 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00005269
ATGTCAGCGCTGGGGGGCTTCCACTGCCGGAGCTGCAACATGGCCTTCCGCTCGCCCGGCCTGCTGGAGACGCACCGGCAGCGCTTCTGCATCGGCAGCGAGATCGGGGACCCCTTCGTCCTGAACCGCGGCCGTGCCGAGGGCCCCTGGAGAGAGGCAGGGCCCAAGAGGACCAACACTCCTGATTTTATAAAGAGGGCGCGGCAATGGGAGGAGAGAGCTGGCGACAGGGACGGGGAGATCCGGGGCAGCCTGTCTGACAGCCTGGCACTGCGGAAGCTGACGGATGAGtttcacaaGCTGAGGCTGTCCCTCGAGGAGAGCCTGCCCTCGGTACCAGGCTGGGTGCAGGCCGAGGAGTCCCGGGTGCCGCCAAGGGAGTGGGAATACAACACTCGGGAGGAGAGGAACGAGTGGGCCCTGCAGCAGCTCTCGGAGCAGATACAGGCGCTGCACGGCCAGCAGGGCACCGCAGCAGCTCCGGTCCAGCCTGGCCCCCCAAGCCCAGCACCCCCCGAGGCGGAGGCCCACACTCTGGAGCGGACTGGCCCGAGGGCAGAGCACAGgggcaagaagaagaagaAAGCGGAGCCCCCCCCGCGGGCCCTGGACTCGGAGCTGCAGGCGGTGGAGCGGGAGAACCAGCGCCTGGAGGAGGACATCCTGAGACTGCAGCTGCAGCGCGAGAGACAGCGGGGCGAGGAGGAAGCAGTAGGGCTGCAGGAGATGCAGAGGGATCACGTGCGACAGATGGCGGCGGTGCAGACGGAGATCGAGAGCCTGCGCAGGGACCTGGAGAGAGGCAGGGACCCCCCCCGGGGCCGGGCGCCACCCCCACCCGTCCCTCCGCCACCTCCACTGCCCCCGCCGCTCCCCCATTACCCTCCTGGGGGGCTCGGACAGCCGCTCCCGCCTCCGGCCACGATGTCAGGCTCAGtggagctgctgctgatgtCATGTTGGCTGTGTGTCCTACAGGAGCGAGTCCAGCCCCCGATTGGTCAACACCTGCTGGAGCCCCCCGAGGCCCTGAGCCCTGCACCCTATGACCCCGTGGCGGGCTTCGTGCTATTCTATGACTTCGTCCTGGGGCTGGAGCCCACGCTGAGTATGGTGCGCCTGGTGGTGGGTCTGTACTCGGGGGGGCAGGAGATGGGCAGGCCCACGCCGCTGCCAGCTGTGTACTGCGAGGTCGGGGGGGGCCTGCCCTACGTCACCACCGGCCACCCTGGAAACATCGCCACGCTGTCGGTCAAACAGCCAGTGCCCAGGGTGCACCCGTCGCCCTCTATCTGCCTGGTGGTGGAGCTGCAGGCGGCGGGCGGCTTCGACTCCTACGGCCAGGAGGTCCAGCGGCTGGTGTCGCGGGGCTGGGCCCGGCTGGACCTCTTCGATCAGCACAACCGGGTCCAGAGCGGCTGGTGGAAGGTCCCGTTCCGCACCCTGCCCGTGCGGCCGGCCCTCAGCACCGGGCAGCTCAACGCAGTCCCCCAGGTGGGCCGTGCGGAGCTGTACCTGCGGGTGGTCAACGCCCGGGACGGGGATATGCAGTCCTTGGCCAACACTGATCCGGGCACTGCCAGCCAGTACAAGTACCCAGCCATGGTATGTGCACCAGCCGGCCTCGGCCCGGTGGCGACCCGCCCCGTGGTCCACCTGGAGAACCCGGCCCCTCGCCACGCCGCTTTTCAGCCCCCAGCCAATCGCTACCTTTCCCTGCTTCCTCCCACTGATCACGTGGACCCTCCTCCCCCCATGGAGGGATCCAATCAGagCGGGCCCGCTCCCACTGGGGAAGGGGTGGCGGGGGTGGGCATCATCGTGGACCGAGTGAGAGGGGCCCCCCTGGGGGACGGCAGCCTGAGACTGACGGGGTACAGCCAGAGGACCGGCAAGGTGATCGAGTGCGGCCTGGCGGGCATGCTGTGCTACACCTCCACAGTGAGCTCCTGCATCAAACACGGGGAGTTCGCCTTTGGAGAGCAGCAGATCTTCTTCCCCGGCGTGCAGCCCCAGAAGGACCAGGTCCTGATCCTGCGCTTCTATCACTGGCCCAGCAGCAGCCCCTCAGCGGCCACCTGCCCCTGGGAGCAGGCCGGCGTCCCAGGGAGTCTGGCCGAGAGAGAGGAGTGCGCCGCGGCCTGGGGGCTCCTCAGGCTGACCCGGCCCCCCGCCCTGGGGCAGACGGAGAGTCCGGCCGGCCGGCAGTGGACCTGGAACACGGGCACTCACTCCGTCGTGCTCTACCATGCGCCTGCCCCCCCCGCCGCCGCGCTCACAGCCCTGTCTGCAGAGCAACAGGTGACACCCTTTGAACCCTACGGGGACGCGTCGGCTCGCATGCACGTCTACAGCGGGGAGAGGCCTGCGTTCCCCTTCCCCCCCGACTCCCCGATCGACACCTCCATCCCCACAGACTGGCCCCAGGCCGCCTACATCCTGTGTCGCAGGGAGAGCCCCCCGGCACGGCCCTTCCTGGCAGGGGACGGGACGGACCTGTACATCGACGGGGCGCGGTTCCTGCCTGACTGCGTGACCGTCAGCAGGGTGACCGGCCGCATCTTCGACAGACACTATAACCAGGTGGGCCCAGACATCTCCACCGGCATCGACCTGGACAGCAACATCTTCGAGCCCGTCTACGGGGAGCGCGTGGAGATCCGCTGCCCCTGCCTGCCCCCCTCTGCCACACTCCTACTGAAGctgtATGCCGTGGACCGTTTCTCTCGCAGGCTGGTGCTGATCGGCTGGGCGGCGCTGGGGCTGTTCGTGGAGTCGGGCAGTGAGACGCAGCCCAGCCTGGACACGGGGGGCCTGCAGgtgtcATTAAACGAGGGGGCCCACCAGCTCAGGCTGTACCACAGCGGCCCCGACCCCAACAAGCCCCTGTCCTGCGGCGCGCTGAGCACAGGGGGCAGCCTGCTGGTGCGCCTGCTGAGAGCCCCCGTGGACGAGAGCGGCCGGGCGCTGAGCCAGGGGGCCGTGGCCCAGGCGGACTGGGAGCCGGTGGGCTTGTTCTGCCCCCGGCCCAGCTACTCCGAGGGTGGGTACTTCTCCGAATCAGCCAAGCCCAGCCAGGGGGAGGCCTGCCTGCACATGGCCATGAGCAACAGGTCTGTGGTGCTGGTCCGGGAGATTGTGGCTCAGCTGGCGGGGAGCCAGGGGGCGGAGCCGAGTTCCGACGCGGAGATATTGGATTGGATCAAGCAGAACACGAGTCGCATGATGGACAGCAAGCCTCAGCCCTTCAACCTGAGCCTGGTGTCTCGCTATCTCAGCTGCTTCGGGGTGAAGGTATCAGTGGACGGGGGCCTCAACTTGCCCTGGTCCTCCTTCACTCTGGCTCTGTGCGCCTTCAGCCCCCCGGCCGCCTTCTACCACGGAGCGTCCGCGGTGAAATATGACAGGCCGGCCATCTTCCAGGAGCTGGACTTCAGCAGCAGCCACAGCGCCCCCCGGTGGCTGGATGGGTTTAAGCCCTTGCTAGCCTCACCCAGCCCCTCTGTGCGCCAGTCTTTCCCCAGGCGGATGCACCACCCATACCTGGCGGTGATCGTCCACCTGCACGCCATGTCCGTCCTCACCAGCAGAGAGACGCAGGCGACCAAGAGCCAGGGCCTCACCTACAGCCTAGAGGGTCAGGCCTGGGCGGCCGTGCCCATCTTTACCCGGGGGTACTGCCACACTGCCCGCTACCAGCTGCCCCTCTACCAGGGAGCCCCTTCGGAGGCTGCCCTCAGCATGCTGTCGCAGGGACCGTGCCACAGCGTCCTGGAGAACCTGAGACAGAAGGGCCAGGTGCAGCTGCTGAGGGGAGCATCTGTGTTTGTGCGAATCGCAGACGGCAGGAGGGACGGGGAGCTGGACAGCTGTGGGGACCAGGACACAGACCTGTCCCAGCTGCCCCTTGACCAGAGAGACTCCTACAGCCCCCAGCCCACGACCGCACCCCTGTCCCAGCTGATCCCCACCGGACGCCCCAGAGACGAGTTTGTAAGGCAGCTGTCCGTGCGCTTCACACAGCTGATCTTCAAGACCCTGAAGGACACACCTGAACACCGTGCACCCATCCTCCTACAGCCCCCGACCCACCCTCCACTGGATCCCAGCAGCCTCCCCCCACAGCCATCAGCAGCCCTGCTCCACTCGGCCTCCCCAGCGGCCCGTCCCCCTTCAGCCACACAGGCCCAGATGGGTGCACCTTCACAGCCCCCCAAACCCAAACTCCCCAGTTCACTGTGA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00005269 True 4242 mRNA 0.68 30 20147412 20159101

Neighbor


gene id symbol gene type direction distance location
AMCG00005264 prdx1,tdx,LOC108267618,LOC108430734,LOC105891340,LOC106600402 coding downstream 15673 20127159 ~ 20131739 (-)
AMCG00005268 NA coding downstream 20569 20120780 ~ 20126843 (-)
AMCG00005258 uck2,LOC106584056,LOC105005905,LOC106560433,LOC107731246,LOC107668082 coding downstream 104069 20030569 ~ 20043343 (-)
AMCG00005259 NA coding downstream 120707 20024174 ~ 20026705 (-)
AMCG00005257 NA coding downstream 152748 19981534 ~ 19994664 (-)
AMCG00005267 LOC106560440 coding upstream 4250 20163351 ~ 20174057 (-)
AMCG00005265 ipp coding upstream 16396 20175497 ~ 20180979 (-)
AMCG00005266 NA coding upstream 23279 20182380 ~ 20186437 (-)
AMCG00005271 NA coding upstream 211567 20370668 ~ 20391561 (-)
AMCG00005277 LOC103468264,LOC108238356,LOC106512499 coding upstream 364945 20524046 ~ 20525301 (-)
G146503 NA non-coding downstream 58 20146085 ~ 20147354 (-)
G146487 NA non-coding downstream 37882 20108125 ~ 20109530 (-)
G146469 NA non-coding downstream 83999 20062549 ~ 20063413 (-)
G146461 NA non-coding downstream 94491 20050116 ~ 20052921 (-)
G146358 NA non-coding downstream 372421 19771772 ~ 19774991 (-)
G146576 NA non-coding upstream 362548 20521649 ~ 20523818 (-)
G146578 NA non-coding upstream 375267 20534368 ~ 20535200 (-)
G146607 NA non-coding upstream 440138 20599239 ~ 20599503 (-)
G146609 NA non-coding upstream 441073 20600174 ~ 20600514 (-)
G146623 NA non-coding upstream 475023 20634124 ~ 20636209 (-)
AMCG00005263 NA other downstream 39585 20103626 ~ 20107827 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other downstream 123905 19999167 ~ 20023507 (-)
AMCG00005240 NA other downstream 385966 19758232 ~ 19761446 (-)
G146313 NA other downstream 574094 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 1122951 19013077 ~ 19024461 (-)
G146532 NA other upstream 115290 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 156959 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 331950 20491051 ~ 20502206 (-)
G146618 NA other upstream 450253 20609354 ~ 20610643 (-)
AMCG00005333 NA other upstream 1326848 21485949 ~ 21487711 (-)

Expression



Co-expression Network