AMCG00005270 (pik3r3b,LOC107675943,LOC106584012)


Basic Information

Item Value
gene id AMCG00005270
gene name pik3r3b,LOC107675943,LOC106584012
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20316060 ~ 20339165 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005270
GCCGCGCAGGACAGCGGGCTGGAAAGTAGAGCTGGTTTCTACTTCCTGATCTGGAGGACTGTTACGATTTTGTAAATGTAGAGCAggaaggttttctttttaaagcctggtgctttaattttttgttttacagtttactCCCCTCCCCTCAAAAGAAatccaattaatcaatcaatcaatcaatcagccGGCCCATGCTATTTATTCTGAAGCGGGCTTTCAGAGCGCAAGAGTGACATGCCGTGCTAGCGGGAGAGCCAGTGCTCCTCACCCCGGCTCTGTGTGTCGTTCCTGGGGAGAGTCCAGCGCGCCGGCCGCTCCTGCCATGTATAACACGGTGTGGAGCGCGGAGAGGGACGAGCGGGACTGGCGGGAGGTGGTGATGCCCTACTCCACCGAGCTCATCTTCTACATCGAGATGGACCAGCCTCCAGCTCTTCCTCCGAAGCCACCCAAACCCATGACTCCAGTCAACACTAGCAGCATTAAGGATGCGTCCAGTGTGTCCCTGCAGGAGGCAGAATGGTACTGGGGAGATATATCAAGGGAAGAGGTGAATGACAAGCTCCGAGACATGCCAGACGGTACATTCTTGGTCCGGGACGCCTCTACTAAGATGCAGGGCGACTACACCTTAACGCTAAGgaaGGGTGGCAATAACAAGCTGATAAAGATTTATCACAGAGATGGCAAGTATGGTTTTTCGGACCCCTTGACCTTCAGCTCTGTTGTGGAGCTGATCAGCCATTATCGCCACGAGTCCCTGGCCCAGTACAACCCCAAGCTGGATGTGAAGCTCATGTACCCAATCTCTAGGTACCAGCAGGATCAGCTTGTGAAAGAAGACAATATAGATGCTGTGGGGAAGAAACTCCAGGAATATCATAATCAATATCAGGAGAAAAGCAAGGAGTACGACCGACTATATGAAGAGTACACACGAACGTCGCAGGAAATCCAAATGAAGAGAACGGCAATCGAGGCTTTcaatgaaacaatcaagatcTTCGAGGAGCAGTGTCACACGCAGGAGCGCTACAGCAAAGACTACATCGAGCGTTTCCGCAGGGAAGGCAACGACAAGGAGATTGAGAGAATCATGATGAACTACGAGAAGCTGAAGTCGCGTCTGGGTGAGATTCATGACAGCAAGGTGCGCCTGGAACAGGACCTGAAGAATCAGGCACTAGACAACCGGGAGACggacaaaaaaatgaacagcCTGAAGCCCGATCTGATCCAGCTGCGCAAGATCCGGGACCAGTACCTCGTCTGGCTCAATCACAAAGGCGTCCGTCAGAAACGAATTAATGACTGGTTGGGAATCAAGAACGAAAATATTGACGACACCTACTTTGTGAACGAGGAGGACGAGAACCTGCCGCACTATGACGAGAAGAGCTGGTTCGTCGGGGATCTGAACCGGACGCAGGCGGAGGACCTGCTGCTGGGAAAACCCGACGGCTCCTTCCTAATCAGAGAGAGCAGCAAGAAAGGGTGCTATGCGTGCTCTGTGGTCGTGGAAGGCGAAGTGaagcactgtgtgatctacagcACCCCCCGGGGATTTGGCTTCGCAGAGCCTTACAACCTTTACAGCACCCTGAAAGACCTAGTACTGCACTACCACCAGACTTCCCTGGTTCAGCACAACGACTCTCTCAACGTGCGGCTGGCATACCCCGTTTACGCACAAATGCCCCCTCTCCGCAGATGAATCCTGGGAGAAGAAAAGGGGGCTCGGGGGAGAGAGAAACGAAGAAGAAGAGAAACTTGCTGCGACACACGTCAGCCACCTTggagttatatatattttttactagAACAATTTGAGGGCATTCTTTCTAAAGACTGCTTGATTTGCACAAGGAAGTTTTAATGTTCTGAATGTGAAACAGAAATGAAACGTCGGAAACCAGAGGCGGATTCGTCTCGACCTGAGTTCAGGTGACCAGGTGCTACCTAAACTCCAGCTGTGACTTtttacactgtttattttttttttttgtacacttttttttctccatcctTCCTTTGGTCTAAATGAAAGGAACCAGAAATGGAAGTAATTGTTTTTCCCTCCATGTTaagaggggtggggtgggggggggcagggaatGTAGCAAACCATCGCAGAAATGTGCCGGTTGTCATCCGAGACGCTGCCGGACTGCAGCGGGGGAAGAAGTTTTGTAGTCTTAAAGAAGAGCTCGCTTTTTAAACTGTAAGGACTCAAGCCACAggaggtttttttgtttttgttttttttggtatgttttACTTTAGTTTTCAGGCTTTTAGTTTGGCTGGACTTCCAGAACTGGCTAGTTTTCctacaaagcagaaaaaaaagtttctgtcCCGTAGAAACCGACCAAAGTTAGCCTTGGAGAAACTCCACTTAATGAATtaagagaagaaaaagtaaaCTCAAAGATGCTTTGTTTTGTGCCACACATGAAAACCGTTTGGGTTCGCTCTTGTATAACACTAAAGCTCCAAAAGTGTATTCTGAACCAAATTGTACCCACTGAAATTCAGTTTGAAGcacttatttaaaaagtaaaatgtctaCAGCTGCACATTTCAACACCaaattttggaaaacaaaaaaccctgAAACccctttgttttgtgtgtgtggtggaaAATATAAGCGGTCCGTTTTAACATTGGGATGTTATATGCGATTGTTCTTTTATGGAACTTTAATAAGCTTTGAACGATTAAGCAGGTACAGCAGTTTTGCGTTTAAGagtcaaaaaatgttttagcaaATATGAATGGAAGGAAGTGCAATCCGATATTTATTGGTGGGATATACAGCTGCAGTATCCCCTGGTCAGTCGCACAGACAAGGccgaaacaaataaaaaaaattcaaatgcaCAATATACCCTTGAAGAAAACTGATTTTTATACTGGTCCTATTTATGGTGCTTGACTTTATAACCAGTCATCTCATTGGCTGCCTGTTTGGGATTTTTAAGTCGCATTAATAAACTAAAAGTTTTACATTCACAATGGCTATTTAGAGACTTTCTTGCAGGATCCTATCGCTTTTTGCCAGGTTTGATTGATATTTGCAAAGAGGATGGGCAACAAAATTCCTCGACAGCGTCACTGCGCTCCACCGAACCCCTAGCTGACCc
>TU184375
GCAAACCATCGCAGAAATGTGCCGGTTGTCATCCGAGACGCTGCCGGACTGCAGCGGGGGAAGAAGTTTTGTAGTCTTAAAGAAGAGCTCGCTTTTTAAACTGTAAGGACTCAAGCCACAggaggtttttttgtttttgttttttttggtatgttttACTTTAGTTTTCAGGCTTTTAGTTTGGCTGGACTTCCAGAACTGGCTAGTTTTCctacaaagcagaaaaaaaagtttctgtcCCGTAGAAACCGACCAAAGTTAGCCTTGGAGAAACTCCACTTAATGAATtaagagaagaaaaagtaaaCTCAAAGATGCTTTGTTTTGTGCCACACATGAAAACCGTTTGGGTTCGCTCTTGTATAACACTAAAGCTCCAAAAGTGTATTCTGAACCAAATTGTACCCACTGAAATTCAGTTTGAAGcacttatttaaaaagtaaaatgtctaCAGCTGCACATTTCAACACCaaattttggaaaacaaaaaaccctgAAACccctttgttttgtgtgtgtggtggaaAATATAAGCGGTCCGTTTTAACATTGGGATGTTATATGCGATTGTTCTTTTATGGAACTTTAATAAGCTTTGAACGATTAAGCAGGTACAGCAGTTTTGCGTTTAAGagtcaaaaaatgttttagcaaATATGAATGGAAGGAAGTGCAATCCGATATTTATTGGTGGGATATACAGCTGCAGTATCCCCTGGTCAGTCGCACAGACAAGGccgaaacaaataaaaaaaattcaaatgcaCAATATACCCTTGAAGAAAACTGATTTTTATACTGGTCCTATTTATGGTGCTTGACTTTATAACCAGTCATCTCATTGGCTGCCTGTTTGGGATTTTTAAGTCGCATTAATAAACTAAAAGTTTTACATTCACAATGGCTATTTAGAGACTTTCTTGCAGGATCCTATCGCTTTTTGCCAGGTTTGATTGATATTTGCAAAGAGGATGGGCAACAAAATTCCTCGACAGCGTCACTGCGCTCCACCGAACCCCTAGCTGACCccttttctatacattttaaccACTGTTGTGGCAATGGTACAACTCAAGGTTATTCCATTACAAATGGGCCAACGCAGCAGCCGGGTTTGCGGTAAAAGATTTTTAAACCGCTTCCCATTCAGGCTTAAACTATTGGCTCGGCCTTCCCAATACACCGGATTATTATGGGTTCTCTTCATGCCAATTGGCTGCTTTTAATGCGTGTTATTTGAGAAGGAAAAGGTGGGGGTGAATCTAATCCAGGTAGTCACTCTCACTGATTTACCCAGAAGCCTTAAggttgcaggtttttttttttttttttggggggggggggATGCCTAAGCCGCCTCTGGCCCATAAACCTCACCCAGCCCTCTCACACCAAGCCAGCATGTCCGGACTGACTGAGGGAACGGCTCGACCGCGCTTTCCTCGGCTGTTGTGCTCCAGTCTATAAACTGTAAATCCATGACTTTATTTGAGTTGATCCCCATTCCCCCACAAGTTGTGTGAGGAACTAATCAGGACTTAAACGGGCCTGTTTCTATTACTTGAACTATTATTGCTCactgttgaatgtttttatgaTGCATATATACAGGTATATAAAATCCTTTTCTGATGATATGGTACACAAGATGGGATTTAAatgtctggtgtgtgtgtgtgtgtgtgtgtgtgtatatatttaaaaaaaaaaaaaaaaaaaaaaaaatcccatggGATTTTTCAATTCTTCTGGCTCAACAGACGAAACGGTCCGTTTTAGAGCATTGGTCATTCTTAAAAGCAACGTTTTGTTTTGCGTTTAATTTTAACACGGTTCGCGTGTCAAATGGTCACGTTAGCGGAGATAAGACCGACACTACACTTTGGTTTAGATCCCAAATGATGGTTTGAAGgagggttttgtgttttttttgcttttgttctgGCATTGAGACCAAAGATTTaagttgaatttaatttgagaCCGATAGTTTGAGGGATATTCTTGAAAAGGTTCTTACAATAAAAAGCGGACgtgctttgtttttctgaatgcCTTTTTGATAAATCCTGTAGTTGGGTTGCCACTTCAGTTAAACCCGATTTTAAATGGTGTTGGGAAATGCCAGCATGGACGGGGTGGTCATCCATATCTGTGCTTTAGATGAGGAAcgatgtctgtgttttgtttaacagaCACTTTTCTCAGATTTAACTGAAGGCTGCGCTTTTCTGAATGCTTTTAACCTTGTAACTGTGCAGGCAAGAAGGATGTAacgaatgtgtttttgtattttgagttttcttttctgaattTTCTTGTCACTTTTATATCAGTGTTTCTGTGACACAACCAACACTTGGTTCACCGGCAGagcgttttttttgttttgttttgtttttttgttttttaaccaatatatgcatttgttttcttcagtttagTCAGTATTGTATTTGCACACGAGCTGGTGCAAATGTCTTTCTCCATTTTAAATGCCTAAAGTCCTCTGTCCCCGGGTACTTGGGCTCGTCTCTCACAAAGTGATTGTCGTTCTCTGCAGGGCAGAAAGCGCTACGATTTGTACTGATCTGTGGGTTCTTGGTTCTTTCActacagatgaaaacaaaaccaaacaacgCAATATCCTTTTGTCTGTTCGCATTTCCAGGGTCAAAAGAGCATTGCTTGTGGTTCAACCAAGAAACTGGCTAAATCCGTGAATGAATGCTGTTGCTTTTTATCACCTGAGGAAAAGACGAAACCAAGCCGAGCAAACCTTGCATAATTTGGGTGGAAAATGATTGATGGTGGATAGACCAAAAGAATATAGTTCATGTTGACATCTTTCCCCGAGTGGTTTCTCTTTAAAAGACTAAGCCGAAGCTCCGGACGGCCAGAGTTTGGCCGATCCCGAACTGCAGCTAGAGCGGTCTGATTGagggaaattaattttgaaattttCAGTTTTCCCCACATAGCCCTGCAAAGTTTTATTTGCAGTTGGGTTTAATATGTTGAATATTTCACCAGGaatctttttcttctgttcatatGACTGCTGGCTTGCACAGAGTCCTGGCCACAGCTTACTAAAGGGATACTGCAtctttaatgaaagaaaacccTGGCTCAccatttttcttccccccttttGACATATTTACAAAAACCCAGCATGCATCTTTGGTACTCttgactgttgtttttttgtggaaaaaaaaaaaaaagttatttgtctGTTAATGGTGTATACAAACTGAATTTAATATAGCTGAGAATACAAGGCACTGCTTAACGCTGCAGCAATTTAGGACCCTGTACAACTGTAGTGGTTTTAAAAAAGattaacatatatacaaaattaaaaaaaaaaaaaaaaaaaaaaagatatatactgAGAAAGAGGCTATTGACCAGAGCAATACAGACTGTTTGGTTGTAATTGTTTCACTTTccctacattttcttttaataaataaaccaaatccTTTGCCAATGCATATTTAAAGCTgtacacaccaaaaaaaaaaaaaaatacatttcaaaacttcctgctttaaatgttttatcatagTGATTGGCTTCGTtgaatattcaattaaaaaaatgctgttcttTGTTGCACCTTATTCAGGTCATTTCAAGGCCTGCTCCGGAAACTTAATTAGGCCAATGACATGactttgtactgtatttgtctGATCACATTAGAttggattatttaaaatacagtataagcAATAACACATTGGCTCTTACAGTCCATCTGTGGACAAAAGTAACTGGTGACACAAGGAGACTAAAATCTCAGTCTCATGCAAATGTGCTTCCATCTTCACTCGGTGAGTTTGAAGTTCACGCTACGTCTGTCCTTTGCTCTCCTGGAAAGCCCTGCCTGTGTCCGACTTACAATCCGCCGATTGGTCGTTGTTGTTGTACAGGATATTACAGACCCCGTTTTGTTATTGCGTTGTTATTGcgtttccttccttccttcgtACATACGGCCTCTTTCTCAGTATCGCAACAATAATTGCTTCAGGCTTCTAGGTatcattcagttacatttttcatcaCAGTACAAATTTTTTCTTGTATCTGTTGCAATAGTTTGTATTGGTTGTAGAAATCTCCATTTGTTATGGGATAAACTCATGTATAACATTGACAAAACT

Function

symbol description
pik3r3b Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in insulin receptor signaling pathway; phosphatidylinositol phosphate biosynthetic process; and regulation of phosphatidylinositol 3-kinase activity. Predicted to act upstream of or within phosphorylation. Predicted to be part of phosphatidylinositol 3-kinase complex. Is expressed in immature eye; nervous system; neural tube; periderm; and somite. Human ortholog(s) of this gene implicated in colon adenocarcinoma. Orthologous to human PIK3R3 (phosphoinositide-3-kinase regulatory subunit 3).

GO:

id name namespace
GO:0043551 regulation of phosphatidylinositol 3-kinase activity biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035014 phosphatidylinositol 3-kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005270 False 3152 mRNA 0.46 10 20320591 20339165
TU184375 True 4179 lncRNA 0.39 2 20316060 20321620

Neighbor

gene id symbol gene type direction distance location
AMCG00005266 NA coding downstream 129623 20182380 ~ 20186437 (-)
AMCG00005265 ipp coding downstream 135081 20175497 ~ 20180979 (-)
AMCG00005267 LOC106560440 coding downstream 142003 20163351 ~ 20174057 (-)
AMCG00005269 NA coding downstream 156959 20147412 ~ 20159101 (-)
AMCG00005264 prdx1,tdx,LOC108267618,LOC108430734,LOC105891340,LOC106600402 coding downstream 184321 20127159 ~ 20131739 (-)
AMCG00005271 NA coding upstream 31503 20370668 ~ 20391561 (-)
AMCG00005277 LOC103468264,LOC108238356,LOC106512499 coding upstream 184881 20524046 ~ 20525301 (-)
AMCG00005275 NA coding upstream 202937 20542102 ~ 20547367 (-)
AMCG00005294 NA coding upstream 300493 20639658 ~ 20643224 (-)
AMCG00005295 NA coding upstream 308391 20647556 ~ 20677947 (-)
G146503 NA non-coding downstream 168706 20146085 ~ 20147354 (-)
G146487 NA non-coding downstream 206530 20108125 ~ 20109530 (-)
G146469 NA non-coding downstream 252647 20062549 ~ 20063413 (-)
G146461 NA non-coding downstream 263139 20050116 ~ 20052921 (-)
G146358 NA non-coding downstream 541069 19771772 ~ 19774991 (-)
G146576 NA non-coding upstream 182484 20521649 ~ 20523818 (-)
G146578 NA non-coding upstream 195203 20534368 ~ 20535200 (-)
G146607 NA non-coding upstream 260074 20599239 ~ 20599503 (-)
G146609 NA non-coding upstream 261009 20600174 ~ 20600514 (-)
G146623 NA non-coding upstream 294959 20634124 ~ 20636209 (-)
G146532 NA other downstream 36314 20274391 ~ 20279746 (-)
AMCG00005263 NA other downstream 208233 20103626 ~ 20107827 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other downstream 292553 19999167 ~ 20023507 (-)
AMCG00005240 NA other downstream 554614 19758232 ~ 19761446 (-)
G146313 NA other downstream 742742 19570059 ~ 19573318 (-)
AMCG00005276 pomgnt1 other upstream 151886 20491051 ~ 20502206 (-)
G146618 NA other upstream 270189 20609354 ~ 20610643 (-)
AMCG00005333 NA other upstream 1146784 21485949 ~ 21487711 (-)
G146938 NA other upstream 1405711 21744876 ~ 21745453 (-)
AMCG00005343 NA other upstream 1406379 21745544 ~ 21747798 (-)

Expression


Co-expression Network