AMCG00005274


Basic Information

Item Value
gene id AMCG00005274
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20484932 ~ 20489664 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005274
CTGGGGGGGGCTGTCCTGCTGGCCATGGGGATCTGGGTGAGCGTGGACGGGACCTCCTTCCTGAAGGTCATGGGGTCCATCTCCCCGCAAGTCACTCAGTTCGTCAACGTGGGCTACTTCTGCATCGCCATCGGCGCTGTCCTCGTCCTGCTGGGCTTCCTCGGCTGCTGCGGGGCCAAGAAGGAGAGCAAGTCATTTCCTGTGAACGTCCACCAGCAGGACCTTGCCCGTGCTGAAACCGGCCCGCCTGCTCTTCACAAGTTTTTTACCATCGTCCTGATCATTTTCATCGCTGAAGTGGCGGCTGCTGTCGTGGCTCTGGTCTACTCCTCGTTTGCAGACAGTCTCCTGAAGGCGTGGGCCGGCCCAGCCCTGCAGACTCAGTACGGGAAAGACAAAGACGTGACTCAGATATGGAACACCACGATGCAAGAGTTGAAGTGCTGCGGTTTAGATGGCTACGGGGACTTCAACAATTCTGTATATTACAACACCAATGGAAACAAATACCCCCCCTACTGCTGCAACCAGAACTCTGTTTGCACCCTGGACCAAGCAAAAAGCAGTAACATAGAGGGATGTTTCCCGCAGCTTTTAATAACCATCAAAAAGTACGCGAACATCGTCGGAGGCATTGCTGCTGGCATCTGCGCTCTTGAGCTGGCGGCGATGGTGGTGTCCATGTACCTCTACTGTCACATTGACAATAAAGAATGAGCCACAGCCCTGCATGAGGAGAGCGAGAGTCTGAAAACCAAACCTAACCGCGCACCCTAGATAAGCCCCATGTCTGTCCTTACGATtctcaataaacaaaaatcaatccGAGTCGACACCTGCACAGCACTGCGCAAATCACTGCACACCCGTCTCTCACCAGatagagaaacagaaacaaggCCTTATAAAAGCAGACTAATTTAATCATTGatgtcattatatataataatataatattcgCTGCAGGTGTTGGTTTCGAGTATTTCCACTCCCTCCACTACTTTTAAAATTTTACTTAGTGCTTTTAGAAAACATCAGTTAGTCTAAAACAGCGTCATGTGGCCGGCGGTGTGATTTACACTCTGAAGGAGAAGTGAAGCACCAGCACACGTATGAAGAGGTCTGATACAGGAAAACTCCCCCTGCCGACATATGTAGAGTAGAAAAGATTCTCAGAGACAAGAAGAGAACCTCAAcagccccccacctcccctcacAGGTTATATCAGCAAAGACAATCTTCACTGCTACGGTTGAAAACTACGAATGCCCACGAGCTCAGCAAGGGCTCCACAGTCCGAGGTTCAAGTCCCAGCATGCCCCACAGCAGCACCTCCAGGAGGAAAGCCGTCTGGCCAGGATGCTGCACATTTAATGAAGACGACCCTTCTGATTTCAGTTGAGGAGAAACGGACCAGGCGCTTCCTGCTTCTGGTGCTTTCTGTAAGGATGTTGAGGCTTCAGACGGGAAGACTTCCACTTCTATGACTTCTGAGTTTTAAAGCTGGCCGCTGTTTTCTCCTTCTATGTCGGTTTTTGAACACCACCTCATACTTTATGATCATAAGGGTTAGTTGTGTAAAATCATTCTGCTTTCAAATCAATTGTTTACAAAGTGCCAACCTTGATGTGCCAAGACGTGGGTCAACTGTTCTTGCACGAAAACCTGCACACGCTGTCCaccaaccaaccaatcaatTCATTGACTAATGTGATCAGTTTTTATATTCTGCAAACTTTAGATGTATTATTGTGTACATGACTGCATTATGAGAGAA

Function

GO: NA

KEGG:

id description
K17348 TSPAN1; tetraspanin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005274 True 1778 mRNA 0.49 7 20484932 20489664

Neighbor

gene id symbol gene type direction distance location
AMCG00005273 mast2 coding upstream 275475 20208791 ~ 20209457 (+)
AMCG00005260 NA coding upstream 309601 20172733 ~ 20175331 (+)
AMCG00005261 nasp,LOC107551040,LOC107731628 coding upstream 336648 20141222 ~ 20148284 (+)
AMCG00005262 akr1a1,akr1a1b,LOC107725198 coding upstream 344984 20129229 ~ 20139948 (+)
AMCG00005255 aldh9a1a.1,LOC102301203,LOC106676834 coding upstream 421535 20051949 ~ 20063397 (+)
AMCG00005278 NA coding downstream 100082 20589746 ~ 20595754 (+)
AMCG00005279 NA coding downstream 108079 20597743 ~ 20627931 (+)
AMCG00005287 si:ch211-121a2.4,LOC107687197,LOC107581514,LOC103033168,LOC108416079,LOC107712847 coding downstream 251514 20741178 ~ 20742301 (+)
AMCG00005288 NA coding downstream 273968 20763632 ~ 20768980 (+)
AMCG00005282 NA coding downstream 291644 20781308 ~ 20794020 (+)
G146544 NA non-coding upstream 151810 20316007 ~ 20333122 (+)
G146486 NA non-coding upstream 375391 20108102 ~ 20109541 (+)
G146450 NA non-coding upstream 458871 20024173 ~ 20026061 (+)
G146442 NA non-coding upstream 473797 20007416 ~ 20011135 (+)
G146350 NA non-coding upstream 724141 19760152 ~ 19760791 (+)
G146590 NA non-coding downstream 152604 20642268 ~ 20655773 (+)
G146591 NA non-coding downstream 153108 20642772 ~ 20712220 (+)
G146599 NA non-coding downstream 192961 20682625 ~ 20738321 (+)
G146640 NA non-coding downstream 260640 20750304 ~ 20750938 (+)
G146701 NA non-coding downstream 366047 20855711 ~ 20855918 (+)
AMCG00005272 mast2 other upstream 205146 20253009 ~ 20279786 (+)
G146519 NA other upstream 300289 20182354 ~ 20184643 (+)
G146305 NA other upstream 905125 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 954479 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1663290 18815029 ~ 18821642 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 31985 20521649 ~ 20524819 (+)
G146596 NA other downstream 172262 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 209822 20699486 ~ 20702472 (+)
AMCG00005280 NA other downstream 307794 20797458 ~ 20803197 (+)
G146790 NA other downstream 847768 21337432 ~ 21340712 (+)

Expression


Co-expression Network