AMCG00005289 (dhcr24,LOC107581458,LOC107687183)


Basic Information

Item Value
gene id AMCG00005289
gene name dhcr24,LOC107581458,LOC107687183
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20769036 ~ 20780518 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005289
GTGCGGGGCGACTGTGCGGGACGCGCAGTAGAAACACGCTCTTCTTCTTCCGGCAGCGTTATTATCTGTAGTCGCTGCAGAagctgtctgtccgtctgtccgtctgtgGAGCGGAGACCCGCGGCGACATGGACCCGCTGCTGTACCTGGGCGGCGCGCTGGCGCTGTTCCTGGCGTGGGTGAAGGTGAAGGGGCTCGACTACGTGATCATCCATCAGCGCTGGATCTTCGTCTGCCTCTTCCTGCTGCCGCTGTCCGTGGTCTTCGACGTGTACTACTACCTGCGCGCCTGGCTCATCTTCAAGCTGTGCTCGGCCCCCCGGCAGCACGACCAGCGTGTGCGGGACATCCAGAGACAGGTTGGGGAATGGAGGAAGGAGGGCGGCGGGACCTACATGTGCACGGGGCGTCCCGGCTGGCTGACCGTGTCTCTGCGCGTGGGCAAGTACAAGAAGACCCACAAGAACATCATGATCAACCTGATGGACATCCTGGAGGTGGACACCAAGAGACAGGTGGTGCGCGTGGAGCCCCTGGTGAACATGGGTCAGGTGACCGCTCTCCTCAACTCCATTGGCTGGACCCTGCCGGTGCTGCCGGAGCTCGATGACCTCACCGTGGGGGGTCTGGTGATGGGCACAGGGATCGAGTCTTCCTCCCACATCTACGGGCTGTTCCAGCACATCTGCGTGGCCTTCGAGCTGGTTCTGGCCGACGGGAGCCTGGTCCGGTGCACTGCGAAGGAGAACTCGGAGCTGTTCTACGCCGTGCCCTGGTCCTGCGGCACGCTGGGCTTCCTGGTGGCCGCCGAGGTGCGCATCATCCCGGCACGGCGCTACGTGCGGCTGCGCTATGAGCCAGTGAGGGGTCTGGCCAACATCTGCCAGCGGTTCGCCCAGGAGTCGGCCAACAAGGAGAACCAGTTCGTGGAGGGGCTGCAGTACTCCCGGGACGAGGCCGTCATCATGACCGGGGTGATGACCGAGGAGGCGGAGCCAGACAAGATCAACCGCATCGGGCTCTACTTCAAGCCCTGGTTCTTCAAACACGTGGAGAGCTTCCTGCGGGCCGACCGACGCGCCGTGGAGTACATCCCCCTGCGGCACTACTACCACCGGCACACGCGCAGCATATTCTGGGAGCTGCAGgaCATCATCCCGTTCGGCAACAGCCCCGTGTTCCGCTTCCTGTTTGGCTGGATGGTGCCGCCCAAGATCTCTCTGCTGAAGCTGACGCAGGGCGAGACGATCCGCCGGCTGTACGAGCAGCACCACGTGGTCCAGGACATGCTGGTGCCCATGCGGCACCTGGAGGCGGCCATCAGCGCCTTCCACAATGACATCCATGTGTACCCGCTGTGGCTGTGCCCCTTCATCCTGCCCCGGCAGCCGGGCATGGTGCACCCGAAGGGCGAGGAGGCCGAGCTGTACGTGGACATCGGGGCGTACGGGGAGCCACGCGTCAAGCACTTCCAGGCCCGGCCCTCCATGCGGCAGCTGGAGAAGTTCGTGCGCAGTGTGCACGGGTTTCAGATGCTGTACGCCGACGTGTACATGGACCGCCAGGAGTTCTGGGAGATGTTCGACGGCTCGCTCTACCACAAGCTGCGGGAGGAGCTGGGCTGCAAGGACGCCTTTCCCGAGGTTTACGACAAGATCTGCAAAGCGGCCCGGCACTGAGCAGCCCCCCGGCCGCGCGGGGGAGGTCCGGCAGCCCTTTACTTCCCCGCTGCCCCCCCGCCCTGCTGCGTGTGTGAGGACGAGACAGACACCGCAGGGAGGGGCTagatccttttttttccttccatttttCTCCCCCATCCCCTTCTGGTGCTTCAGCCACAATCACAATGCTCCACACAGACCCGGACCGGATTCAGTTCTTCAATGACAGTCGAGGGCTCGGCTCACAGTGCTGCAGGTGAACACTGTGGGAAGAGCTCTGCCTCTTTGCGTTGGGTGTCTGCTGTTCCTGGATCAGTAAAACCCAGACCCAGACACGGCGCTGCAGCGCAACCATCCGTGCCATGTTGTCCCGGGAGTGGCAGAACCACAGCAGAACCAGGAGGCACGGGAGAAGACCTAGACCCAGTCACTGCAGCTGCTGAAGATCGAGCTTTATTAATCTGTTGGAAGCCATAAAAAAGTGCAGAGTGGTGTTTTTTTACGGATTTTAACTGATGAATATGGGCTGTGGGCCCACTGGGACCGGACCACTCGGTTGgcgtgattgtgtgtgtgtgtttgggaggCTTGTCCCCGGTGAATCGGGCTCTATGGAGGTCCTCGTCCAGCCGGAACAGAGGACTTGCCTTTTCTCCGTGTCCAGGCAACAGCCGGAGCCGCCGATGCTTTTGCTCCGGGCTGAAGCGCTGTCATTGTCCTCCCCCAGCGCGCCCGGCCGAGGGCACAGCTTCACTCGCGATCACAAGCCTTGGACTTtctgtgttctttttttctttcctctgctTATTCCAAAAACAGCCACACAACGTCACTCATTCATGAATGTCAACCTCAGGGGGCTGGAGAACAAACCTCTCGGTGTTTGGATCTGGTCTTCTGGGTCCACGGCGTCTCAATGTGCTGCTGGACCAGAGCAGAAAACAGTTCTGTGCTTCAAACCTCAGccttatttacacacacacacacacacacacacacacaaagttccCCACTTCATCAAAGTCAAGTTGCCTTTTCGCTCCTGTGATGAAACCTGATTGCTGCGCTGTTTCACACCGCTCTGAGCCCTTAGAGGACTGGAGGGAGGAGCTGCATCAAACCCTGTCTGTCTGAGGAGCAGTGGTCTGTAGAGGACCCCCTTTCACCCCCGACCTTAAACAGCGTCACCAACAGAGCCTTGCCTTATTAACACACCCGGATTCAATCATGTCTTCTCCCATTCCACTGCACTAGGTTCAGATAAGCCCCTCGAATTGTaaaagatatacatatatatctgatgcaagtgattatatatttttcttttatcattTCCTCCTTCGTCAGTGACCTCGGCATGGGTTTGACCTTTGCACGTGCAAAACGGACGCACACACAATCAGCACACCCCCCTGCTTCTGTATATGATTGATCGTTGTTCCTTGATTCTCTTAAAAATACTTCCTCTCTCCTAATCGGGGTTTTGCTTTGCCGTGGAGTAGCCGTGTCGCCCCGGTGTGAGGCGGACACGGAGCAGGGTTGCGTTTCGTCCTGCTATGCGATGCGGATTTCTGGTGCCAGTTCTGCAGTCAGTGTCCCACAtgcttatattttgtctttgtgaaaACCGTGACAAGTGCAATATGAGATGAACCAATGACAGCTGCCCGTCCGCAGCCACCGGGCGGCCGATGAAGCGGACGTCCGGAGGAACAGGGAGGAGggtctttttcttttgtgtttcattttaagcaCTCGGGCACGAGTTACGCTTCGATTCGCGATCGCGTGGAGGCGATTTGAAGATCCTTCTCTCGCAACACCATTCCTGGGTCCTGCTGAGGGTCGAGTGTGGTGAAGTGCGGTGCCGCTGTGGGTGAGAGGCGGTGGTGAGGGCGGCGATACTGTGAACCTGTGAACTGTCTTTGAACATCCTTGTCGTGTTTCATTGATGgggatatttatttatggctttggttacaaatcaataaatacacttGAACTCTGCAGTGAAA

Function

symbol description
dhcr24 Predicted to enable delta24(24-1) sterol reductase activity. Predicted to be involved in steroid metabolic process. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and membrane. Is expressed in cranial ganglion; lens; solid lens vesicle; telencephalon; and yolk syncytial layer. Human ortholog(s) of this gene implicated in lipid metabolism disorder. Orthologous to human DHCR24 (24-dehydrocholesterol reductase).

NR:

description
delta(24)-sterol reductase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K09828 DHCR24, DWF1; Delta24-sterol reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005289 True 3679 mRNA 0.58 9 20769036 20780518

Neighbor

gene id symbol gene type direction distance location
AMCG00005290 NA coding downstream 8206 20757391 ~ 20760830 (-)
AMCG00005292 NA coding downstream 13542 20752234 ~ 20755494 (-)
AMCG00005296 NA coding downstream 17137 20746440 ~ 20751899 (-)
AMCG00005291 NA coding downstream 33954 20723878 ~ 20735082 (-)
AMCG00005293 NA coding downstream 59067 20708786 ~ 20709969 (-)
AMCG00005285 usp24 coding upstream 34325 20814843 ~ 20849602 (-)
AMCG00005305 plpp3,LOC107716555,LOC107657212,LOC107712879,LOC107697342,LOC107597805,LOC106560230 coding upstream 202348 20982866 ~ 20999934 (-)
AMCG00005304 NA coding upstream 254274 21034792 ~ 21049355 (-)
AMCG00005297 NA coding upstream 278791 21059309 ~ 21067609 (-)
AMCG00005299 NA coding upstream 288754 21069272 ~ 21085318 (-)
G146652 NA non-coding downstream 11715 20756956 ~ 20757321 (-)
G146631 NA non-coding downstream 61430 20694815 ~ 20707606 (-)
G146623 NA non-coding downstream 132827 20634124 ~ 20636209 (-)
G146609 NA non-coding downstream 168522 20600174 ~ 20600514 (-)
G146607 NA non-coding downstream 169533 20599239 ~ 20599503 (-)
G146702 NA non-coding upstream 77082 20857600 ~ 20857802 (-)
G146813 NA non-coding upstream 600788 21381306 ~ 21381569 (-)
G146857 NA non-coding upstream 779531 21560049 ~ 21561461 (-)
G146891 NA non-coding upstream 809478 21589996 ~ 21606535 (-)
G146951 NA non-coding upstream 1026462 21806980 ~ 21807306 (-)
G146618 NA other downstream 158393 20609354 ~ 20610643 (-)
AMCG00005276 pomgnt1 other downstream 266830 20491051 ~ 20502206 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other downstream 429871 20316060 ~ 20339165 (-)
G146532 NA other downstream 489290 20274391 ~ 20279746 (-)
AMCG00005263 NA other downstream 661209 20103626 ~ 20107827 (-)
AMCG00005333 NA other upstream 705431 21485949 ~ 21487711 (-)
G146938 NA other upstream 964358 21744876 ~ 21745453 (-)
AMCG00005343 NA other upstream 965026 21745544 ~ 21747798 (-)
AMCG00005363 NA other upstream 1190517 21971035 ~ 21982521 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other upstream 1250307 22030825 ~ 22054967 (-)

Expression


Co-expression Network