AMCG00005295


Basic Information

Item Value
gene id AMCG00005295
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20647556 ~ 20677947 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005295
ATGTTTCCGACGAGAGGCAGTCCCCGAGGCCCCGGGGGGAAGTTTTTCGGCGCTTTGTTTCTGAAGAGATCCAGCAAGATGATGAAAATGAAGAGAAAGAGCAAAACGCTGCGGGCATCCAGCCAGTCCCACAGAGCCCGTGTCCCCGGACAGAAGCGCCATGTCAAGCGCTGCTGCGGGCTGTGGCTGAGCACATACCCTGCCCTTGCTGATCAGTACGGAGATATTTTCAGCCTTCGGGTGGGACAGAGAGCAGTTTTTCTGAATGGCTACAAACTGGTTAAAGAAGCTCTGGTCCACGATGGAGATAGCTTTGCAGATCGTCCAGAAATCCCCCTGTTTGTGGATATCTTCAAAAACAAAGGTAGACCGTTTGACCCCCAGTTCACAATCAACAATGCTGTGTCCAACATCATCTGCTCTGTGGTGTTCGGGGACCGGTTTGAGTACAGCGATAGTCGCTTCCAGGATCTGCTGAGCAACATTTTCTCCCACTGGGAGGCTGTGATGTCTTTTGTGAAGTCTCAgattaaacaacacaaacaggacTGGGACCCATCAGCCCCCCGCGACTACATCGACTGCTACCTGACTGAGATGAAAAAgGGCACTCTGGTGACTCCGAATTTGACCTCTGTGCTGTTTGACAAGAATGAGTGGGAAACGCCCGATACTTTTAACCCAGGACACTTTCTGGACGCTGATGGGAAGTTCATGAGAAGAGATGCATTCATGCCGTTCTCAGCTGGTAACTCTTTATTTCAGCGTGCACTTGGAGAAGCATATGGAGAGATTTTCAGCCTTCGGATTGGACAGAGAATGGTTGTCCTGAATGGTTACAAGCTGGTCAAGGAGGCTTTGGTCCAACATGGAGACGACTATGTGGATCGGCCATCGCTGCCATTATGTAATGACATGTACCCAAGGAAAGGAAGGCCTTTTGACCCCCAGCTCACCATTAACAACGCCGTCTCCAACATCATCTGCTGTCTGGTGTTTGGCGAGCGGTTCGAGTACAGCGACGCACAGTTTCAGGAGCTGCTGCGGCTCATTGATGAGGCTGTGCATCTGCAAGTGAAATTGGCAGTCTGGGTTTACAATGCCATCCCTGTCATAATGAGGAGACTACCTGGATCACACCAGAAAGTCCTTTCGATCTGGGCTGCTGTGATCTCTTTCATAAGGTCTAAGATCAAAGAACACAAAGAGGACTGGGACCCATCAGCCCCCCGGGACTACATTGACTGCTACCTGACCGAGATGGGAAAGGGTACAGAGGACTCCAGTGCGGGCTTTGATGAGGAAAACCTGGCATGCTGCACCCTGGATCTGTTCACAGCCGGGACTGAAACCACGTCAACCACTCTGCGCTGGGGCCTCCTCTACATGATCAAATACCCAGAGATCCAGAGAAGGCCTTTTGACCCCCAGCTCACCATTAACAGTGCTGTCTCCAACATCATCTGCTGTCTGGTGTTTGGCGAGCGGTTCGAGTACAGCGACGCACAGTTTCAGGAGCTGCTGCGGCTCATTGATGAGGCCATGTATCTTGAAGGGAAATGGGCAGTCCAGGTTTACAATGTCATCCCTGTCATAATGAGGAGACTACCCGGATCACACCAGAAAGTCTTTTCGAACTGGGCCGCTGTGATCTCTTTCATAAGGTCTAAGATCAAAGAACACAAAGAGGACTGGGACCCTTCAGCCCCCCGGGACTACATTGACTGCTACCTGACTGAGATGGGAAAGTTTGAAGCAGACTCCAGTGCAGGTTTTGATGAGGAAAACCTGGCATGCTGCACCCTGGATCTGTTTTCGGCTGGGACTGAGACCACATCAACCACTCTGCGCTGGGGTCTCCTCTACATGATCAAATACCCAGAGATCCAGAGTAAGCTGTACAAAACACATTGA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005295 True 1914 mRNA 0.51 12 20647556 20677947

Neighbor

gene id symbol gene type direction distance location
AMCG00005294 NA coding downstream 4332 20639658 ~ 20643224 (-)
AMCG00005275 NA coding downstream 100189 20542102 ~ 20547367 (-)
AMCG00005277 LOC103468264,LOC108238356,LOC106512499 coding downstream 122255 20524046 ~ 20525301 (-)
AMCG00005271 NA coding downstream 255995 20370668 ~ 20391561 (-)
AMCG00005266 NA coding downstream 461119 20182380 ~ 20186437 (-)
AMCG00005293 NA coding upstream 30839 20708786 ~ 20709969 (-)
AMCG00005291 NA coding upstream 45931 20723878 ~ 20735082 (-)
AMCG00005296 NA coding upstream 68493 20746440 ~ 20751899 (-)
AMCG00005292 NA coding upstream 74287 20752234 ~ 20755494 (-)
AMCG00005290 NA coding upstream 79444 20757391 ~ 20760830 (-)
G146623 NA non-coding downstream 11347 20634124 ~ 20636209 (-)
G146609 NA non-coding downstream 47042 20600174 ~ 20600514 (-)
G146607 NA non-coding downstream 48053 20599239 ~ 20599503 (-)
G146578 NA non-coding downstream 112356 20534368 ~ 20535200 (-)
G146576 NA non-coding downstream 123738 20521649 ~ 20523818 (-)
G146631 NA non-coding upstream 16868 20694815 ~ 20707606 (-)
G146652 NA non-coding upstream 79009 20756956 ~ 20757321 (-)
G146702 NA non-coding upstream 179653 20857600 ~ 20857802 (-)
G146813 NA non-coding upstream 703359 21381306 ~ 21381569 (-)
G146857 NA non-coding upstream 882102 21560049 ~ 21561461 (-)
G146618 NA other downstream 36913 20609354 ~ 20610643 (-)
AMCG00005276 pomgnt1 other downstream 145350 20491051 ~ 20502206 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other downstream 308391 20316060 ~ 20339165 (-)
G146532 NA other downstream 367810 20274391 ~ 20279746 (-)
AMCG00005263 NA other downstream 539729 20103626 ~ 20107827 (-)
AMCG00005333 NA other upstream 808002 21485949 ~ 21487711 (-)
G146938 NA other upstream 1066929 21744876 ~ 21745453 (-)
AMCG00005343 NA other upstream 1067597 21745544 ~ 21747798 (-)
AMCG00005363 NA other upstream 1293088 21971035 ~ 21982521 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other upstream 1352878 22030825 ~ 22054967 (-)

Expression


Co-expression Network