AMCG00005297


Basic Information

Item Value
gene id AMCG00005297
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21059309 ~ 21067609 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005297
ATGAGGACACATGCGGTGAAGGTGAGCAAGGAGGTCCAGGGGCACCCTTACAACGCCAGCAGAAGGGCTCTGTACAAAGGGCGCTGGACCCGGTCAGCTGAATCTCCTCCCGAGCCTGTGGACTGCCAGCTCTCTGAGTGGTCTGAGTGGAGCCGCTGTGACCCGTGCCAGAAGAAGAGATACCGTTACACCACTCTGCAGCAGCTGTCCCAGTTCGGAGGGGAGCCCTGCACCAGCAGCGGCCAAGACGAGGAGTCCTGCGTCCCCACGGCCTCCTGCAGGGACCGCACACGGTGTGAGGGTTTCGTCTGCTCAGTCACAGGCCGGTGCATCCCTCTGTGGCTCAAGTGCAATGGAGACGATGATTGCGGGGATCAGTCTGACGAGCGGGACTGCAGGAAAGTGTCCAAGGCCTGCAAGACTGAGGTGGAGGAGTACTGGGGCATCGAGAACTTGGGCAAAGGGTTAAATATACTGAACGGTAACTTGGAAGGCGTAGTTATTGATAACAGATACTACGCTGGCAGCTGCTTACCCCAGTATATGTACAATACAAGGTTTAGAAAACCCTTCAATTTGCAGGACTACATCCTTGAGACAAAAGGAACACACGAGTTTGTCCTGAACGAATACGAGTCATACTCCAGTTACGAGAaagacacactgacagcacaCAGCTCCCAGAAGAGTGTCTCCATCGGGATTTCATTTCCGGGTGTCTTCGAGTTTGGGTTCAACTACCAAGACGCTAAATTCAGGACGACGGTGGAGAAGACACGACGCTTTTCCGGAACAAAAAACAGTTTCATCCGTGCCTATTCCAAGCTGGAGGTGGCCAAGTACAGGCTGAAGTCCCGGGATCTGATGTTGCACTACGAGTTCTTCCGTCGGCTCCGCGCCCTCCCGGTGGAGTACAGCTACGGGGAGTACCGGCAGATCTTCAGGGACTACGGCACACACTACATCACCGAGGCCACGCTGGGGGGCGAGTACGAGTACACGGTTGTGGTCAACCAGGAGAACATCGAGCATTTAGGGTACAAGCTGAGTGATGTCAAGAACTGTGTGGAAGCCGGCGTGAAGGTGGGCGCCAAAATCAAGGGTGTCTACGTGAGCTTCGGAATGATGGGTGGCAGCTGCCCCAGCCTGCTGAAGGAACTGGGAGacaGCACCGCGCAGAAGAAGTTTGTCGAAGACTTTATCGTGGTGGTGAAGGGCGGTGCCAGCGAGTTCACGTCCAGGCTGGCATACAAGAAGCTGCCCACCCCCGAGCTAATGCAGGAGTGGGGCGACGCCGTGCAGTACAACCCAGACTTCATCGAGACCAAGATCGAGCCCTTGTTCGAGCTGGTGAAGTCCTCCGATTTCGCCAATGCCATCACCCTCAAGAGGAACCTGCGCCAAGCCCTGGGGGAGTACCTGGCGGAGAGCAGCAGCTGCCGTTGCCTCCCCTGTCTCAATAACGGCCTGGCAGTCATGAAGGGCACCAGGTGCGAGTGCGTGTGTCCGGTGGGGTTCCAGGGCCAGGCCTGTGAAGTGACACAAAGAACAGGGGTTGCGGTGGACGGCAGCTGGAGTTGCTGGTCTCCATGGTCAGCCTGCAGCAGCCAGACGCAGCGCCGGACTCGCACCTGCACCAACCCCGCCCCGCAGAACGGGGGGGTGGCCTGCTCGGGGATACAGGAGGAGACGGGGACGTGCAAGTGATTCACGGACAAAAGCAAAGCACTCTCGCCTTCTCGCCCTTCAGCTGCTGTCCACCAATAAAGCTGCTTGTCCCTGCAGACGGTGTCGGCTGAGCTTATTCTCTGACTGCCAGGCTTCCTTCATCAGGTTGTTTTCTTCTAGAAGACGTAGAGAGAGTCACCATCGACAGATATGGTGCTCACATGTAGCCATTGACACCAAACATAATAAAGGATGAAAGACACAGTTTCCAA

Function

GO: NA

KEGG:

id description
K03998 C8B; complement component 8 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005297 True 1940 mRNA 0.56 12 21059309 21067609

Neighbor

gene id symbol gene type direction distance location
AMCG00005304 NA coding downstream 9954 21034792 ~ 21049355 (-)
AMCG00005305 plpp3,LOC107716555,LOC107657212,LOC107712879,LOC107697342,LOC107597805,LOC106560230 coding downstream 59375 20982866 ~ 20999934 (-)
AMCG00005285 usp24 coding downstream 209707 20814843 ~ 20849602 (-)
AMCG00005289 dhcr24,LOC107581458,LOC107687183 coding downstream 278791 20769036 ~ 20780518 (-)
AMCG00005290 NA coding downstream 298479 20757391 ~ 20760830 (-)
AMCG00005299 NA coding upstream 1663 21069272 ~ 21085318 (-)
AMCG00005300 NA coding upstream 18976 21086585 ~ 21095144 (-)
AMCG00005301 NA coding upstream 30956 21098565 ~ 21099069 (-)
AMCG00005298 dab1a,LOC107716552,LOC107712876,LOC107581465 coding upstream 44126 21111735 ~ 21114855 (-)
AMCG00005308 NA coding upstream 242456 21310065 ~ 21316985 (-)
G146702 NA non-coding downstream 201507 20857600 ~ 20857802 (-)
G146652 NA non-coding downstream 301988 20756956 ~ 20757321 (-)
G146631 NA non-coding downstream 351703 20694815 ~ 20707606 (-)
G146623 NA non-coding downstream 423100 20634124 ~ 20636209 (-)
G146609 NA non-coding downstream 458795 20600174 ~ 20600514 (-)
G146813 NA non-coding upstream 313697 21381306 ~ 21381569 (-)
G146857 NA non-coding upstream 492440 21560049 ~ 21561461 (-)
G146891 NA non-coding upstream 522387 21589996 ~ 21606535 (-)
G146951 NA non-coding upstream 739371 21806980 ~ 21807306 (-)
G147122 NA non-coding upstream 1064657 22132266 ~ 22180932 (-)
G146618 NA other downstream 448666 20609354 ~ 20610643 (-)
AMCG00005276 pomgnt1 other downstream 557103 20491051 ~ 20502206 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other downstream 720144 20316060 ~ 20339165 (-)
G146532 NA other downstream 779563 20274391 ~ 20279746 (-)
AMCG00005263 NA other downstream 951482 20103626 ~ 20107827 (-)
AMCG00005333 NA other upstream 418340 21485949 ~ 21487711 (-)
G146938 NA other upstream 677267 21744876 ~ 21745453 (-)
AMCG00005343 NA other upstream 677935 21745544 ~ 21747798 (-)
AMCG00005363 NA other upstream 903426 21971035 ~ 21982521 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other upstream 963216 22030825 ~ 22054967 (-)

Expression


Co-expression Network