AMCG00005303


Basic Information

Item Value
gene id AMCG00005303
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21050477 ~ 21059289 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005303
ATGCAGCCGGGACAGAGCTGCTCTGGTGTACAGGTGCCAGTCACTGCCATGATCCTGAGAGCGATGTGTTCCCCAGGGGGCTCCTTTTTTCTGCTGCTGTGCCTGAGTCAGTGGGTTTGGGTCCAGGCTGTTGACACCCTCTGCAGTCCAGCTGAAGGGAGCAGACAGAACCACACCGGGAGGACACCGCGGTCAGTCGGCCGACCAGCTGCGGTGGACTGTAGTCTGGGCCAGTGGTCACCATGGACCATGTGTTCAGCCTGTGAAGGCAAGAAGCACCAGTACCGGTCTCTGGAGCGGCCGGCCCAGTTCGGCGGTGCCCAGTGTGCAGGGGTGCAGTGGGCGGAGAGAGCCTGCACCGCGGACACACCATGCCAGCGCCAGGATGGGTGCGGGGACGCCTTCTCCTGCAAGGAGACAGGCAAGTTCAACTCTCTCAGGCGCTGTATCAGCCGCAGGTTGCTGTGTAACGGGGACCAGGACTGCCAGGACGGATCGGACGAGGATGACTGTGGAGACCCAGACGAGCAAGACAGCTTCTGCAAACGGCTGTTCCCCATCCCCGGCTCAGAGAGGGTCGTTCGAGGTTATAATGTTTTAACCGAAGACTTCGTCCTCAACACCATGGACCCGGTTTACTACGGGGGGTTTTGTGAATACGTCTACAATGGCGATTGGAGGGAGCTGGTCTACGACGCTTTCTGTGAACACATCTACTACAACGACGACGAGAAGTATTATCGGAAGCCCTACAACTTCCTCTCCTACCGCTTCATGGCCCAGGTGGACTCCGGAAGCTCCTCCGAATTCTACGACGACGCCGTGAGCTTGTTGAGAGCGAGGAAGCAGGGGGATTCCTTCAAGATCGGATTCACCTTCGGAATCGAGAAGTTCGAACTTGGCGCTTCTTATCATCGGGATTCCGAGTCCCTGAGGAACCTTACGCGATACACCGATCAGAACATGGGATTTGTACGGATTTTGTCAAAAGTCCAAACTGCGCAGTTTCGGATGAAAAGCGATGGTTTGGTCCTGACTGAAGACATGCAGCAGGCTCTAGCAGAACTCCCAGATCAATACAACTATGGGATGTACTCCAAATTCATCAATAACTATGGGACCCACTATGTCACCTCTGGCACCATGGGGGGTGTTCTCGAGTACATCTTGGTTGTTGACAAGAAACACATGGAGCAAACCGAGATCACAGCGGACCAGATCAGACACTGCGCTGCCTTGTCTCTAGGATTCAATATCAAAGCAGGACTTAAATTGTCTATCACGCCAAAGTATTGCAACGACAAAGCTTTCACGACCTCAGCGGGGACGTCGAGCAGCAGTTTAATTAAAGACGGCATCAGTCTGGTCCGGGGCGGAGACATGGGGAGCAGCGGGGGGTTGCTGGCCGCCTTCAATGAGAACACGTACAGGCACTGGGGCAAATCGCTCAAATACAACCCCACGCTCATTGAGTTTGAGACGCTGCCGATATACGAGCTGGTCCGCGCCAGCACGGCCGTCGCACTGGGGGCCAAGGTGCAGCACCTGCGGCGGGCATGGGGGGAATACCTGCAGGAGTTCAGTGCCTGCCGCTGTCAGCCCTGCCGGAACAACGGGCAGCCCCTGCTCGACGGGCAGGCCTGCCGCTGTCTGTGTCCGCAGGGCTACGACGGAGCGGCCTGCCAGGAGACCCAGAGGACAGGCCCCACACACGGACAGTGGAGCTGCTGGAGCGGCTGGTCGTCCTGTCAGTCGGGACAGAGGACGCGCAGCAGAGAGTGTAACAACCCTGCCCCTCTTGCCGGGGGCCACCGCTGCCTGGGCAGGGCCTCGCAGACGCAGGGCTGTTAGGAGACGCTCTGGACTTTCAGCATTACCCCGGGGCAACTGACATGTACCTGttactgaatattattattaatcacgGTTAATACTGACTCTAATAGTAATAAACAGACCGAAGCTTTGAAACACAAGTGACTTCCTTCATCTATAACCCTTCCTTTCCAGTGTGAATTGGTAAATCGGCCCCGGGACTCACTCACAGCCCTGGGGGCCGTCCTGTTATCTCATGTTATGACGCATCTGCATCAATAACCTACTGAAACACTTTAAGTCTTGTAGTGTTTTGTCTGTATTATAAAACACTAATGACGATGATGAAATCTAC

Function

GO: NA

KEGG:

id description
K03997 C8A; complement component 8 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005303 True 2170 mRNA 0.56 11 21050477 21059289

Neighbor

gene id symbol gene type direction distance location
AMCG00005302 prkaa2 coding upstream 18484 21022204 ~ 21031993 (+)
AMCG00005284 bloc1s2,LOC107581516,LOC107697361,LOC107712883 coding upstream 196447 20850904 ~ 20854030 (+)
AMCG00005283 NA coding upstream 235727 20807201 ~ 20814750 (+)
AMCG00005281 NA coding upstream 244096 20803621 ~ 20806381 (+)
AMCG00005282 NA coding upstream 256457 20781308 ~ 20794020 (+)
AMCG00005311 NA coding downstream 344185 21403474 ~ 21457237 (+)
AMCG00005325 hook1,LOC106613947,LOC107737379 coding downstream 406279 21465568 ~ 21479216 (+)
AMCG00005326 NA coding downstream 440119 21499408 ~ 21509612 (+)
AMCG00005327 NA coding downstream 469933 21529222 ~ 21540905 (+)
AMCG00005328 ipo13,LOC107573327,LOC105910849,LOC107719407 coding downstream 523887 21583176 ~ 21589683 (+)
G146703 NA non-coding upstream 183071 20867206 ~ 20867406 (+)
G146701 NA non-coding upstream 194559 20855711 ~ 20855918 (+)
G146640 NA non-coding upstream 299539 20750304 ~ 20750938 (+)
G146599 NA non-coding upstream 312156 20682625 ~ 20738321 (+)
G146591 NA non-coding upstream 338257 20642772 ~ 20712220 (+)
G146749 NA non-coding downstream 4684 21063973 ~ 21064908 (+)
G146782 NA non-coding downstream 267243 21326532 ~ 21328902 (+)
G146815 NA non-coding downstream 339387 21398676 ~ 21398971 (+)
G146915 NA non-coding downstream 651068 21710357 ~ 21712783 (+)
G146928 NA non-coding downstream 685590 21744879 ~ 21745451 (+)
AMCG00005280 NA other upstream 247280 20797458 ~ 20803197 (+)
AMCG00005286 NA other upstream 348005 20699486 ~ 20702472 (+)
G146596 NA other upstream 380308 20661926 ~ 20670169 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other upstream 525658 20521649 ~ 20524819 (+)
AMCG00005272 mast2 other upstream 770691 20253009 ~ 20279786 (+)
G146790 NA other downstream 278143 21337432 ~ 21340712 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other downstream 507349 21566638 ~ 21572321 (+)
AMCG00005340 ralgps2,LOC106531732 other downstream 621419 21680708 ~ 21704518 (+)
G146952 NA other downstream 752443 21811732 ~ 21848136 (+)
AMCG00005345 NA other downstream 823910 21883199 ~ 21887568 (+)

Expression


Co-expression Network