AMCG00005305 (plpp3,LOC107716555,LOC107657212,LOC107712879,LOC107697342,LOC107597805,LOC106560230)


Basic Information

Item Value
gene id AMCG00005305
gene name plpp3,LOC107716555,LOC107657212,LOC107712879,LOC107697342,LOC107597805,LOC106560230
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20982866 ~ 20999934 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005305
ATGCTGCCATCGATAGTGCTGAACAAGTCCGGCATGCTGCCCTTTCAGAGAGGCTTTTTCTGCGACGACGACAGCATCAAGTACACCTTTAAGAGGAGCACGGTGCCCTCACCCGTGCTGCTGGCCGCCGGCCTCATCGTACCGGTCACCTCCAAGCGGGGTCTGTCCTGCGAGGGGACCCTGCACACGCTAGCGGAGAGGGAGCTGCAAAACATCCCGCCTGGCCTGCCCTTCCTGATTATTGAAACTAGCACTATCAAGCCATACCAGCGAGGGTTTTACTGCAACGACGAGTCTATCAAGTACCCGTACAAAAACGGAGACACCATAAGCGATGCTGTGCTTTGTGCCGCCGGCATTCTTATTGCCATCCTTTCTATAATCCTCGGGGAATGCTATAGAATTCACTATCTGAATGAAGGGTCCAAGTCCTTCATCACCAACCCCTACGTCTCCACCCTGTACAAGCAAGTGGGTGTCTTCATCTTCGGCTGTGCCATCAGCCAGTCCTTCACGGACATCGCGAAGGTGTCAGTGGGGCGCATGCGCCCTCACTTCCTGGATGTGTGCAAGCCGGACTACACCAAAATCGACTGCTCGTCGGGCTACATCTCCAACTACACCTGTCTGGGAGAGGACAGCAAAGTCCAGGAGGCCAGAAAATCCTTCTTCTCGGGCCACGCCTCCTTCTCCATGTACACCATGCTGTATCTGGCGttctaCCTGCAGTCTCGCTTCACGTGGAGAGGTGCTCGTCTACTCCGGCCACTGCTGCAGTTCACCCTGATCATGATGGCTTTCTACACCGGTCTGTCCCGGGTCTCCGACCACAAGCACCACCCCACCGACGTCCTGGCGGGCTTTGTGCAAGGAGCTGTAGTGGCATACTGCATAGGGGTCCAGCTGGACCCTGACACAGCACAGTGTGTCAAGCTGCTCCCGGTCACACTGCTGAAGGTCTTCTATGTGTCGGACCTCTTTAAACCCAAACTGAAGGCTGTGACCCCGCCGTCCTCCCCCATCAAGAAGGAGCTGCTGCCGTCGTCGGACATCATTGACCgcaacaaccaccacaacatGGTGTGA

Function

symbol description
plpp3 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in canonical Wnt signaling pathway; phospholipid dephosphorylation; and phospholipid metabolic process. Predicted to act upstream of or within regulation of Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in somite and vasculature. Orthologous to human PLPP3 (phospholipid phosphatase 3).

NR:

description
PREDICTED: phospholipid phosphatase 3-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01080 PLPP1_2_3; phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005305 True 1086 mRNA 0.56 8 20982866 20999934

Neighbor

gene id symbol gene type direction distance location
AMCG00005285 usp24 coding downstream 133264 20814843 ~ 20849602 (-)
AMCG00005289 dhcr24,LOC107581458,LOC107687183 coding downstream 202348 20769036 ~ 20780518 (-)
AMCG00005290 NA coding downstream 222036 20757391 ~ 20760830 (-)
AMCG00005292 NA coding downstream 227372 20752234 ~ 20755494 (-)
AMCG00005296 NA coding downstream 230967 20746440 ~ 20751899 (-)
AMCG00005304 NA coding upstream 34858 21034792 ~ 21049355 (-)
AMCG00005297 NA coding upstream 59375 21059309 ~ 21067609 (-)
AMCG00005299 NA coding upstream 69338 21069272 ~ 21085318 (-)
AMCG00005300 NA coding upstream 86651 21086585 ~ 21095144 (-)
AMCG00005301 NA coding upstream 98631 21098565 ~ 21099069 (-)
G146702 NA non-coding downstream 125064 20857600 ~ 20857802 (-)
G146652 NA non-coding downstream 225545 20756956 ~ 20757321 (-)
G146631 NA non-coding downstream 275260 20694815 ~ 20707606 (-)
G146623 NA non-coding downstream 346657 20634124 ~ 20636209 (-)
G146609 NA non-coding downstream 382352 20600174 ~ 20600514 (-)
G146813 NA non-coding upstream 381372 21381306 ~ 21381569 (-)
G146857 NA non-coding upstream 560115 21560049 ~ 21561461 (-)
G146891 NA non-coding upstream 590062 21589996 ~ 21606535 (-)
G146951 NA non-coding upstream 807046 21806980 ~ 21807306 (-)
G147122 NA non-coding upstream 1132332 22132266 ~ 22180932 (-)
G146618 NA other downstream 372223 20609354 ~ 20610643 (-)
AMCG00005276 pomgnt1 other downstream 480660 20491051 ~ 20502206 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other downstream 643701 20316060 ~ 20339165 (-)
G146532 NA other downstream 703120 20274391 ~ 20279746 (-)
AMCG00005263 NA other downstream 875039 20103626 ~ 20107827 (-)
AMCG00005333 NA other upstream 486015 21485949 ~ 21487711 (-)
G146938 NA other upstream 744942 21744876 ~ 21745453 (-)
AMCG00005343 NA other upstream 745610 21745544 ~ 21747798 (-)
AMCG00005363 NA other upstream 971101 21971035 ~ 21982521 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other upstream 1030891 22030825 ~ 22054967 (-)

Expression


Co-expression Network