AMCG00005306


Basic Information

Item Value
gene id AMCG00005306
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21331248 ~ 21333536 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005306
ATGCTGTCCACCAGCCTGTTCAACAATCCCTACGCCATTGAAGTCCTTCAGACCAAAAAGAAGGACTTGGTGGAAGGCATTTCCAACACAGAACACCTGCTGAACCTCCTCATCGACAAGGGCATCTTGCCGCCAGAGAAGAAGGTCATCATGGCAAACTACCGGTCTCGGGAGGAGAAGAACTCCCGCGTCCTGGACATCCTGGTCTCCCAAGGCGAGCGGGCTTGCCGCCTGTTCTTCTACCCCTGCCTGAAGCTCGCAGAGCCTGACTTGTACGAAAGCATCAAAGAGTACGTGGGGGATGTGAACGAGAACATCAGAGATGCCCGGAGGCAGCTGATAGGGTACCTTCTGGAGAGGGATCACGGGGGTCCCGTCAAAATAAAGCAGAATCAAACCCCAAAAGCCCTTAAAGCCCCCGAGAAGCCCAAGCGTGCGGTGGTTCCACAAAAGAGGGAAAAGCTCCGATTCAGTGAGCCGGAGAAGACCGTCCCATTGGTGAAGAGAACAGAGGAGCCTAAAGCAGTGCCTCCAAAGCCAGGGGGGGTTTTCGACGCCGCTGCGGCGGGAGACCTCTCCCTCCTGGAGGAGCTTCTTAAGGGCTGCGACGTCAACGCGGTCGACTCCTCCAAGGAGACGCTGTTGCACATGGCCGCGGCACATGGCCGGGTCCCCGTCATCGAGTTCCTGCTCAGCAAAGGGGCCAAGCTGGACGTGAGGGACAGCAAGGGCAGGACCCCGCTGCACAGAGCCGCGGAGAAAGGTCACGTTCAGGCTGTGAAGTTCCTTGTGCAGGCGGGGGCGGACATCTACACCCTGGACAGTGACTCCAAGACTCCAGCTCACTTGGCAGCCCAGAACAAGCACCTCAGCACGGTCAGGGCCCTGGTGGAGGAAGAGACCCGGAGCTTCCGAAATCACAGGGCGTTTTTGCACATGGCGGCCCTCAAGGATGATTCCAGTCTGGCCCAGGTCCTCCTCCAGAGTGGAGCTCCTGTGGACGCAAAGGACAACAAGCAGAGGACCGCACTCTTTCACGCAGTGAATAATGGATTCGAGAGGACGGCCAGGGTCCTTCTGGAAGCCGGAGCCCAGGTAGACTCCGGCATCATCGACGCCGCGTTCAATCACAACAGCCAGTCCATGTACGGCCTCCTCCTGCAGTACAGCAAGGGTTTGTCTCCCGACACCATGCTGTCCGCGCTTTTCAAAGCCGTGCAGAGGAATTTGCAGGGGATCGTGGCGGCGCTGATAGACCGGGGCACCGACATCAACGGGCGCAACGAGATGCAGTACACGCCTGTACTCCTGGCGGTAGAGCTGGGCCACCTCGAAACGGCCAAGGTCCTGGTTGCCAAAAAGGCCCGTCTGGAGGAGAGGTTGCCCAACCAGAACTCCGCGCTGCACCTGGCTGCTCAGAGTGGGAGTCTCGGGGTCACCCAGCTGCTGCTGGAGGCGGGCATGGATGCCAACGTGGCCGGTCCCGGGGACATGGCCCCCCTGCACGTGGCCGCCTTCCACAACAAGCCGGTGCTGGTAGAGGTGCTGGTGAGGGCTGGGGCCCAGGTCAACGCCCCAACCCGAGAGTCTCTCACCGCCCTGCACATTGCCAGTCAGTGCGGCCACGACGACGTCGTTTCCCAGCTGCTCAGGAGCAAGGCGGATGTCCATGCCAAAGACCGGCAGTCGTGGACAGCTCTGCACTACGCCGGTGCACGTGCAGGGGCCGCCACGGTACAGCAGCTACTGGAAAACAGCGCGGACCCCAACGTCGCAGACAAGGAGAAAAAGACACCCTTGCACCTGGCCGCCCTGGATGGAAACTCAGAGGCCGTGTCCGCCCTTCTGCTCGGCAAGGCCAGGGCTGGAGCCAAAGACATGGACGGCTGCACCCCTCTGCACTACGCTGCAGCCAAAGGTCACGTGAGGGTCGCCGAGGCTCTCCTGGCCTCCGGGAAAAACAATGACGACAAAAACGTGTGGCGGAAGACCCCCCTACACATGGCAGCCGAGCACGGGCAGGACGCCGTGGTGGACCTCCTGCTGCCCAGTGGCGCCAAGATCAACGCCCTGGACAACAACCGGGACACCCCTCTGCACTGCGCCTGTCGGGCCGGGCACCTGGGCACCGTGCGGAGCCTGCTGGGCTGGACGCAGGGGGAGAAGGCCAACCTGCAGGCGACCAACAGCGTGAAGAAGACCCCTCTGCAGGTGGCCGAGTCTGGGCAGGGGGAAGGCCACGGGCAGATCGTCACCCTGCTGAAGAAGAAGATGCTGCTGATCAAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005306 True 2289 mRNA 0.61 1 21331248 21333536

Neighbor

gene id symbol gene type direction distance location
AMCG00005309 NA coding downstream 1258 21327357 ~ 21329990 (-)
AMCG00005307 NA coding downstream 5153 21317619 ~ 21326095 (-)
AMCG00005308 NA coding downstream 14263 21310065 ~ 21316985 (-)
AMCG00005298 dab1a,LOC107716552,LOC107712876,LOC107581465 coding downstream 216393 21111735 ~ 21114855 (-)
AMCG00005301 NA coding downstream 232179 21098565 ~ 21099069 (-)
AMCG00005310 NA coding upstream 4709 21338245 ~ 21339228 (-)
AMCG00005312 NA coding upstream 123872 21457408 ~ 21462473 (-)
AMCG00005331 NA coding upstream 170629 21504165 ~ 21521031 (-)
AMCG00005332 NA coding upstream 212899 21546435 ~ 21548854 (-)
AMCG00005334 NA coding upstream 215321 21548857 ~ 21551959 (-)
G146702 NA non-coding downstream 473446 20857600 ~ 20857802 (-)
G146652 NA non-coding downstream 573927 20756956 ~ 20757321 (-)
G146631 NA non-coding downstream 623642 20694815 ~ 20707606 (-)
G146623 NA non-coding downstream 695039 20634124 ~ 20636209 (-)
G146609 NA non-coding downstream 730734 20600174 ~ 20600514 (-)
G146813 NA non-coding upstream 47770 21381306 ~ 21381569 (-)
G146857 NA non-coding upstream 226513 21560049 ~ 21561461 (-)
G146891 NA non-coding upstream 256460 21589996 ~ 21606535 (-)
G146951 NA non-coding upstream 473444 21806980 ~ 21807306 (-)
G147122 NA non-coding upstream 798730 22132266 ~ 22180932 (-)
G146618 NA other downstream 720605 20609354 ~ 20610643 (-)
AMCG00005276 pomgnt1 other downstream 829042 20491051 ~ 20502206 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other downstream 992083 20316060 ~ 20339165 (-)
G146532 NA other downstream 1051502 20274391 ~ 20279746 (-)
AMCG00005263 NA other downstream 1223421 20103626 ~ 20107827 (-)
AMCG00005333 NA other upstream 152413 21485949 ~ 21487711 (-)
G146938 NA other upstream 411340 21744876 ~ 21745453 (-)
AMCG00005343 NA other upstream 412008 21745544 ~ 21747798 (-)
AMCG00005363 NA other upstream 637499 21971035 ~ 21982521 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other upstream 697289 22030825 ~ 22054967 (-)

Expression


Co-expression Network