AMCG00005307


Basic Information

Item Value
gene id AMCG00005307
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21317619 ~ 21326095 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005307
CGCTCACACTGGTGTTTGCCCTCCAGGCCGACGGGGGGCGCTGTGTCCGAGCACACGGGTGAGTCTGGCCTCCGGGCCGGCAGGGGGCGCTGCGGGATCCTCGGCCGTCTGACTGCAGGTCCTGTCGGCTGTGCCAGGCTGTGTGACGAGCAACATGGCGGAGGAGGTGGATGTTGTTGATATTGAGGGAGATGAGTCGGAGTTCAGTGTGAGGGATCAGGACGGTCCGGCACCGGGGTTCCTTCCGGACCAGTACCTGCAGTCGGCCTGGAAGAGCAACAGCGAGATCGTGCCCTGGACCCTGGACAGCTCCATCAGCGAGGAGAACCGGGCCGTGATCGAGAACATGCTGCTGGAGGAGCAGTATTATCTCACCGGGAAGGAGCTGCCCAAGAGCATCTGGCCTGGGGAGAAGCAGAGGCCGGACAAAGTGAAGAAGTCTCCAGTGAAAGCTGCTCACCAGCCGGCCCGGTGGGGGCAGGAGGAGAAGGACCTCTTCGAGAAAGGCCTGGCGCAGTTCGGCCGAAGGTGGACCAAGATAGCGAAGCTTATCGGCAGCCGGACGGTCCTGCAGGTGAAGAGCTACGCACGGCAGTACTTCAAAAACAAGGTGAGGAGGAAATGCAGAGCCCTTCTGGTCACCTGCACCACAGGGCCGCTCAGGAACGAGTGGAGTCGCCCCCTCGGTGTGTCTGAGTGGACAGCAGTGATCGCGCATCACTCTGAGCTCACCTGCTGCCTAATTCCTCTACAGGCCAAGACCGAGGGCATCCTGGTGGACCCCCCGGGAGCCCCTTTCCAGGGACCGTCCAACGGGGAGGTGCTGGGGGGCGGCGGCGGCACCTCCCGGCCAGTGTGGTCGGTGGAGAGCCCGGCCAGCAGCCTGTCCAACGCCGTCCGCATCCAGCGGCTGTCGGACGACGAGGACGTGGACATCACGGATGACACGGACGAGGACGCCGCGCCGCGGGGGGCTGAGGAGGGGCCCGGCAACGAGGACCCAGACGGCCCCCGGGAGGCAGAGACGAGCCCTGGCTCTTCCCCCTCGTGTCGGGACCCGAAGCCGACGCCCGCCTGCTCGTTGGACCAGCACGCCTCGCTCCCCACTCTGGGGGCCAGCGCCGGGCTCGGCCCGGTGAGTGAGCTGCTGGGCGGCTGTGGTCCGCTGCAATGCGAGGCGGGGGCCAACCAGGAGGCTGGAGACAAGGCCAACCCCCCGGAGCTATGGCCGGGGGGCCCGGAGGAGAGCGGACCGGGAGCGGGCCCCGGAGAGACGCTGCCTGAGAGTGAAGACCCCGAGGAAGCAGCTCCAGggctggaggaggaagaggaggaggaggaggaggaggatgaagaggaggagcTGAAAGCCCCCGAGCAGGAGGTGCAGCTGGACGTGGACGCCATCACGGAGGACGAGAAGCAGGCCATCCCCGAGTTCTTCGAGGGCCGTCCGTCCAAGACCCCCGAGCGCTACCTCAAGATCAGGAACTACATCTTGGACCAGTGGGTGAGATCCAAACCCAGGTACCTGAACAAGACCTCCGTGAGGCCGGGCCTGAAGAACTGCGGGGACGTGAACTGCATTGGCCGGATCCACACCTACCTGGAGCTGATCGGGGCGATCAACTTCAACTGTGGTAACGCCGGCCCCCGGGAGCCTCCGATTACTGCGGTGTTCACTTGCCCGACGAAGCACAAACCGCTGGTCTCTCTGTGTGTCGTTTCAGAGCAGGCGATCTACCACCGGCCCAGGATCGTGGACAAGTCTCGCCTGAAGGAGGGACGGGACGCCGTGGAGGCCTACCAGCTGGCGCAGAGGCTGCAGTCCATGCGCACACGGAAACGCCGAGTACGGGACACGTGGGGCAACTGGTGCGACGCCAAGGACCTGGAAGGACAGACGTTCGAGCACCTGAGCGCCGAGGAGCTGGCCAGGAGGAGGGAGGAGCACAGGAGACGGGTCCCCAGGCCCAGCAAGGTCCCCCGACAGGGCAAAGATTCGTTGGACCCCTTCCAGTTGATCCCTTGCAAGTCGTTCGGGGAGGACAAGCAGGAGCCGTTCCGAGTGGTGGTGTCCGCGGCAGCGATGGTGGTCATGGACATGCACGCGCACGTCTCCATGGCCGAGGTCATCGGACTGCTGGGAGGAGGATACGCCGAGGGGGACAAGGTCCTGAAGatctgcgccgCCGAGCCCTGCAACAGCCTGAGCACGGGCCTGCAGTGCGAGATGGACCCCGTGTCCCAGACGCAGGCCTCCGAGGCGCTGGCGGGCCGCGGCTACAGCGTGGTGGGCTGGTACCACTCCCACCCGGCCTTCGACCCCAACCCCTCCGTCCGGGACATCGACACGCAGGCTAAGTTCCAGAGTTACTTCTCTCGGGGGGGCGCCCAGTTCATCGGCATCATCGTCAGCCCCTACAACCCCTCCAACGCCGCGCCGCAGTCCCAGGTCACCTGCCTGGCCGTGAGTGAGGAGTCCAGCGCCGGCGGCCCACGCAGGCTGCCTTTCAAGTTCGAGATGCACCCGTCGCCGGAGGAGCCGGACTGGCCGCAGGTGCTGAGGAAGGCCCGGTGGGTCATCGACAAGTACCGGCTCTCACACGGGAGCGTGCCGATGGACCGACTCTTCCACAGAGACTCGGACCTCACCTGCTTAGAGAAGATGCTGGCGTCCATGAGGTCGTCCCTGGACTTCCTGCAGGAGGACGCGGTGACGGGCTTCCTGGCTCAGGTCGAGACCCTCTTCCTGTCCTGGTTCGTGGCCGAAAGCAGGAGCGGCTACACGGAGGGAGGAGACGCGGCGAGTCCTGGCGAGTGCCCGTCTGGCTCCGAGGAGATGTGACCCTCGTGCCGCTCTGGGAGCCCTGCGTCGTTTCATGAAGCTTCCCCGCAATCCAGCGTCTTCTGTTCGACCCGGGCTTCAGCTCTGTCCCGCAGTCCCCGTCATCAGTGTACATACGTACAAAACCATAAAGGTCTGGAGGTCTACTGCAGCCGTGGGACGCTGAAAAGGAACAATGTCCTCTGTCTGTTAGAACATGAACTTTAGAAACCCTCTCCTCCCGTCCACAAACTCAAACAAGCCAGCGGGGGCAAATGTGTCTTCAGGTCTCCAGCACTGGGATGTGGCCATGTGTGTAGAATTTGCgtatttaaagtgtttgtgttgttgtttcatgTCCCCAGTAAGACAGATCAAATATATCACCTCTGGAGGAGAAGCCGAGAGGCACTCGGGCTCGGCTGTGTGCGGCCGCTGGGTTTTACGAGAAAAGCCCCGTCCACAGTGAGGACGGCTCGAATGTAAACCGTGCTTCAGTATTACAAGGACCCCATATGTATCTGTTGTACATAAAGCAGAACAATAAAACGTTGATAACCAA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0035522 monoubiquitinated histone H2A deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K11865 MYSM1; histone H2A deubiquitinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005307 True 3389 mRNA 0.63 18 21317619 21326095

Neighbor

gene id symbol gene type direction distance location
AMCG00005308 NA coding downstream 634 21310065 ~ 21316985 (-)
AMCG00005298 dab1a,LOC107716552,LOC107712876,LOC107581465 coding downstream 202764 21111735 ~ 21114855 (-)
AMCG00005301 NA coding downstream 218550 21098565 ~ 21099069 (-)
AMCG00005300 NA coding downstream 222475 21086585 ~ 21095144 (-)
AMCG00005299 NA coding downstream 232301 21069272 ~ 21085318 (-)
AMCG00005309 NA coding upstream 1262 21327357 ~ 21329990 (-)
AMCG00005306 NA coding upstream 5153 21331248 ~ 21333536 (-)
AMCG00005310 NA coding upstream 12150 21338245 ~ 21339228 (-)
AMCG00005312 NA coding upstream 131313 21457408 ~ 21462473 (-)
AMCG00005331 NA coding upstream 178070 21504165 ~ 21521031 (-)
G146702 NA non-coding downstream 459817 20857600 ~ 20857802 (-)
G146652 NA non-coding downstream 560298 20756956 ~ 20757321 (-)
G146631 NA non-coding downstream 610013 20694815 ~ 20707606 (-)
G146623 NA non-coding downstream 681410 20634124 ~ 20636209 (-)
G146609 NA non-coding downstream 717105 20600174 ~ 20600514 (-)
G146813 NA non-coding upstream 55211 21381306 ~ 21381569 (-)
G146857 NA non-coding upstream 233954 21560049 ~ 21561461 (-)
G146891 NA non-coding upstream 263901 21589996 ~ 21606535 (-)
G146951 NA non-coding upstream 480885 21806980 ~ 21807306 (-)
G147122 NA non-coding upstream 806171 22132266 ~ 22180932 (-)
G146618 NA other downstream 706976 20609354 ~ 20610643 (-)
AMCG00005276 pomgnt1 other downstream 815413 20491051 ~ 20502206 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other downstream 978454 20316060 ~ 20339165 (-)
G146532 NA other downstream 1037873 20274391 ~ 20279746 (-)
AMCG00005263 NA other downstream 1209792 20103626 ~ 20107827 (-)
AMCG00005333 NA other upstream 159854 21485949 ~ 21487711 (-)
G146938 NA other upstream 418781 21744876 ~ 21745453 (-)
AMCG00005343 NA other upstream 419449 21745544 ~ 21747798 (-)
AMCG00005363 NA other upstream 644940 21971035 ~ 21982521 (-)
AMCG00005362 rgl1,LOC107657943,LOC107750730,LOC107717560 other upstream 704730 22030825 ~ 22054967 (-)

Expression


Co-expression Network