Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00005310 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 21338245 ~ 21339228 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0046686 | response to cadmium ion | biological_process |
| GO:0051597 | response to methylmercury | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0008013 | beta-catenin binding | molecular_function |
| id | description |
|---|---|
| K04448 | JUN; transcription factor AP-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00005310 | True | 984 | mRNA | 0.68 | 1 | 21338245 | 21339228 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00005306 | NA | coding | downstream | 4709 | 21331248 ~ 21333536 (-) |
| AMCG00005309 | NA | coding | downstream | 8255 | 21327357 ~ 21329990 (-) |
| AMCG00005307 | NA | coding | downstream | 12150 | 21317619 ~ 21326095 (-) |
| AMCG00005308 | NA | coding | downstream | 21260 | 21310065 ~ 21316985 (-) |
| AMCG00005298 | dab1a,LOC107716552,LOC107712876,LOC107581465 | coding | downstream | 223390 | 21111735 ~ 21114855 (-) |
| AMCG00005312 | NA | coding | upstream | 118180 | 21457408 ~ 21462473 (-) |
| AMCG00005331 | NA | coding | upstream | 164937 | 21504165 ~ 21521031 (-) |
| AMCG00005332 | NA | coding | upstream | 207207 | 21546435 ~ 21548854 (-) |
| AMCG00005334 | NA | coding | upstream | 209629 | 21548857 ~ 21551959 (-) |
| AMCG00005330 | LOC108238293 | coding | upstream | 233400 | 21572628 ~ 21580706 (-) |
| G146702 | NA | non-coding | downstream | 480443 | 20857600 ~ 20857802 (-) |
| G146652 | NA | non-coding | downstream | 580924 | 20756956 ~ 20757321 (-) |
| G146631 | NA | non-coding | downstream | 630639 | 20694815 ~ 20707606 (-) |
| G146623 | NA | non-coding | downstream | 702036 | 20634124 ~ 20636209 (-) |
| G146609 | NA | non-coding | downstream | 737731 | 20600174 ~ 20600514 (-) |
| G146813 | NA | non-coding | upstream | 42078 | 21381306 ~ 21381569 (-) |
| G146857 | NA | non-coding | upstream | 220821 | 21560049 ~ 21561461 (-) |
| G146891 | NA | non-coding | upstream | 250768 | 21589996 ~ 21606535 (-) |
| G146951 | NA | non-coding | upstream | 467752 | 21806980 ~ 21807306 (-) |
| G147122 | NA | non-coding | upstream | 793038 | 22132266 ~ 22180932 (-) |
| G146618 | NA | other | downstream | 727602 | 20609354 ~ 20610643 (-) |
| AMCG00005276 | pomgnt1 | other | downstream | 836039 | 20491051 ~ 20502206 (-) |
| AMCG00005270 | pik3r3b,LOC107675943,LOC106584012 | other | downstream | 999080 | 20316060 ~ 20339165 (-) |
| G146532 | NA | other | downstream | 1058499 | 20274391 ~ 20279746 (-) |
| AMCG00005263 | NA | other | downstream | 1230418 | 20103626 ~ 20107827 (-) |
| AMCG00005333 | NA | other | upstream | 146721 | 21485949 ~ 21487711 (-) |
| G146938 | NA | other | upstream | 405648 | 21744876 ~ 21745453 (-) |
| AMCG00005343 | NA | other | upstream | 406316 | 21745544 ~ 21747798 (-) |
| AMCG00005363 | NA | other | upstream | 631807 | 21971035 ~ 21982521 (-) |
| AMCG00005362 | rgl1,LOC107657943,LOC107750730,LOC107717560 | other | upstream | 691597 | 22030825 ~ 22054967 (-) |
