AMCG00005311


Basic Information

Item Value
gene id AMCG00005311
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21403474 ~ 21457237 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005311
GTGTGCGGTGGGGTGAGTAGCTCAGGGCAGAAGCTGGCATCCTCCCGGGAGCGTCATGGTCTACGGGACGAGACCCAGTGGCGCAATCGGAAATCAGCTGTGATGTCCGGTGCTGAGCAGTACTACGTGGGGGTGGACGTGGGGACGGCCAGCGTCCGGGCGGCTCTTGTCACAGGGGACGGGCTGGTGAAGACCAGAGCCGAGGAGTCCATCCACATCTGGCAGCCCCGCCCGGAGCACTATAAGGTCACAGAGGGTGTGGATAGAGCAAGGGTTCGAGGGATCGGCTTCGACGCCACCTGCTCTCTGGTGGTCCTGGACAAGAGCTTCCAGCCCCTCGCTGTGGATGTGGACGGACAGAAGGACAGGAACGTGATCATGTGGCTGGACCACAGGGCGTCCGAACAGGCGGTCCGCATCACTGGCACCGGACACGGGGTGCTACGTGCCGTGGGGGGGGTGATGTCCCCGGAGATGCAGCCCCCCAAACTGCTATGGCTCAAAGAAAACCTGCGGGGGTCCTGCTGGGAGGAAGCGGCCCACTTCTTCGACCTGCCGGACTTCCTGTCCTGGAAGGCCACCGGCTCCTTGGAGAGGTCTCTGTGCACCCTGATCTGTAAGTGGACCTACTCCCCTGAAACGGGCTGGGACCACAGCTTCTGGACCAGCATCGGCCTGGAAGATCTACTGGCCGACAACTACTCCAAAATAGGGGCGCACGCCTCCTGCCCGGGCTCCCCGCTGGGACAGGGGCTGACAGAGCAGGCAGCTCTAGAGATGGGTCTGAACACGGGAACAGCGGTCGCCGCCTCCCTCATCGACGCCCACGCTGGGGGACTAGGTGTGATCGGAGCAGACGTGAAGGGGAACGACCTGCCGTGTGAGAGACAGCCAATCACCTCGCGCTTGGCCTTGATCTGCGGCACGTCCTCCTGCCACATGGCGatcAGTGAGAGCCCCATCTTTGTGCCGGGGGTGTGGGGTCCCTATCACTCTGCCATGGTCCCGGGGTTCTGGCTGAACGAAGGGGGACAGAGTGCCACTGGGAAACTGATCGAACACGTGGTCACGGGACATGCCGCCTACCCCGAGCTCCGGGAGAAGGCCGAGGCCAGAGGGGAGAACGTCTACACCGCCCTCAACACGCGCCTGCGCGAGCTGAGCCAGGACGCGCCCCCCGACCTGCTCACCGCACACCTGCACGTCTGGCCAGACTTCCACGGCAACCGCTCTCCGCTGGCAGACCCCACTCTGCGGGGAACGGTAGTGGGTCTGTCGCTGTCCCACAGTCTGGACGACCTGGCTCTTCTCTATCTGGCCACCGTTCAGTCCATTGCGCTGGGCAGCCGACACATCCTGGACACAATGCGCGAGGCAGGACATGACATCAGCACGCTGTTCCTGTGCGGGGGACTGAGCAAGAACCCGGTGTTTGTGCGTGCGCACGCCGACATCACAGGTCTGCCGGTGGTGCTGCCCAGGGAGCCGGAGGCGGTGCTGGTGGGCGTGGCGGTGCTGGCCGCCTGTGCCTCCCGGGACTGCGGCTCCATTCAGCAATGGGGAAAATGGCCAAATTTCTACGACAAGAAGTACAAGGTGTTTCTGCGTCTTGTTGACCACCAGCGGGAGTACAGGGCTCTCATGCGTGACTGAGCAGGGCGGGGGGGCAGTGGGAGCGGCTGCAGTCCACACAGCGATGCCCGCTTTGAGCCCCCGGCCCGCTCCGGTTACACAACCACTACCGCACTGGAGTACATGAGGAATGACGCGGCTAGGCTccaggctggggggggggggagtgatttttgtctgtctttgatAGTGAAGTGGGATGGGACTGCAGATCACCTCTATATTACTAAAATACTTCACACCACCTGCTCAGCTGATCAGAGAGAAATAGTTCCACGTCTTTAGAAGATGCTGATTTGAGAGTGCCCGTTGAAAGCTGTGTGGCCCCGACTCACCTAGATACCTGAGGGACCTCGTTCTGCCAGCATTGCCCCTTCGATGGAGGAGGAATCGAATGGTGAGAGAAGACACTGGGAAGTGGAGTCCACACTAGTCCTACAGCTCCAGTCTGGCGTTAGGAGATGAACCCTATATCACTACTGTTTTATAATCGCAGCACAAATTAACAGCGTTATGGAAGATATACAACCAACTGTAAAAGGtctggaaataataaataaaaggttgaagtttatttacacaaaattaACATTGTGCTGTTGAAGGCTCACGGAGGGGACAGTCATGAACCCCCTTTTGATACATTCAGGACAGAGGCGAACACATCTGACCTGGGAGTGAGAGTGTCTTGTGGTTGCAGGTTTGGGAGTTGATGTGATGACAGATCTGAGAATCGTCTGTAAGATCTCTTCAGCGATTCCTATTGGTCCCATTTCTTCAGTGTGGGTTTGATTATtgtactgaattaaaacaataaacctgGTTGATTAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005311 True 2463 mRNA 0.59 16 21403474 21457237

Neighbor

gene id symbol gene type direction distance location
AMCG00005303 NA coding upstream 344185 21050477 ~ 21059289 (+)
AMCG00005302 prkaa2 coding upstream 371481 21022204 ~ 21031993 (+)
AMCG00005284 bloc1s2,LOC107581516,LOC107697361,LOC107712883 coding upstream 549444 20850904 ~ 20854030 (+)
AMCG00005283 NA coding upstream 588724 20807201 ~ 20814750 (+)
AMCG00005281 NA coding upstream 597093 20803621 ~ 20806381 (+)
AMCG00005325 hook1,LOC106613947,LOC107737379 coding downstream 8331 21465568 ~ 21479216 (+)
AMCG00005326 NA coding downstream 42171 21499408 ~ 21509612 (+)
AMCG00005327 NA coding downstream 71985 21529222 ~ 21540905 (+)
AMCG00005328 ipo13,LOC107573327,LOC105910849,LOC107719407 coding downstream 125939 21583176 ~ 21589683 (+)
AMCG00005313 NA coding downstream 148965 21606202 ~ 21618181 (+)
G146815 NA non-coding upstream 4503 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 74572 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 338566 21063973 ~ 21064908 (+)
G146703 NA non-coding upstream 536068 20867206 ~ 20867406 (+)
G146701 NA non-coding upstream 547556 20855711 ~ 20855918 (+)
G146915 NA non-coding downstream 253120 21710357 ~ 21712783 (+)
G146928 NA non-coding downstream 287642 21744879 ~ 21745451 (+)
G147022 NA non-coding downstream 490849 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 493091 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 499364 21956601 ~ 21957045 (+)
G146790 NA other upstream 62762 21337432 ~ 21340712 (+)
AMCG00005280 NA other upstream 600277 20797458 ~ 20803197 (+)
AMCG00005286 NA other upstream 701002 20699486 ~ 20702472 (+)
G146596 NA other upstream 733305 20661926 ~ 20670169 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other upstream 878655 20521649 ~ 20524819 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other downstream 109401 21566638 ~ 21572321 (+)
AMCG00005340 ralgps2,LOC106531732 other downstream 223471 21680708 ~ 21704518 (+)
G146952 NA other downstream 354495 21811732 ~ 21848136 (+)
AMCG00005345 NA other downstream 425962 21883199 ~ 21887568 (+)
G147021 NA other downstream 488321 21945558 ~ 21947991 (+)

Expression


Co-expression Network