AMCG00005316 (LOC107721804,LOC107712838,LOC105910841,LOC107597850,LOC101160230,LOC107581484)


Basic Information

Item Value
gene id AMCG00005316
gene name LOC107721804,LOC107712838,LOC105910841,LOC107597850,LOC101160230,LOC107581484
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21641391 ~ 21652788 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005316
GCAACTGAGCTGTCAGAGGTGCAGCACAGGACGGACCCGCCACCCGTCCACCTCCCAGTGAGCCGCAGCGCTGGGCTGGACAGCTGCTCATCACAGGACAACTCGGATAATAGTCCCGAACCACAGAAACCAGAACCGGCCACCaccacagcagcagcggccGCGATAACAACGCACATCAATGAAGGATGCCGGAGAGGGCTCGGGCACCGGCCGGCCGGAGTTCATGAAGCCCTCGGTGGCACCATGCGCCTTCTCCCGGAGCCCAGCGCCCAGTCTCTGCGGCTGATCTGCCTGCTGATTTTTGTGATGGGGGTGGCCCCGTCCCCGGCGCTGACGGCCGGCTGCCCGGACCGCTGCGTGTGCGACGACCAGCTGGTGGTCCAGTGCTCCGGCCAGCAGCTCACCGACCTGCCCGTGGACATGCCGCTCGCCACCCGGCAGCTCATCATCTCCAACAACCGCATCAAGGAGCTGCCGGCGCTGCAGCTCAACTACTTGTCCGACCTGGTGTACCTGGACTGCAGCAACAACTCTCTGACGGAGATCTCCGAGTCCACCTTCGGCAACCTCCGCAAGCTCGCCTACCTGGACCTGTCCTTCAACGCGCTGGCGCAGGTGGACGACAGGACGTTCGGGCCGCTGGCCAGCCTGGTGATGCTGCGCATGACGGACAACCCGGGCCTGGCCGACATCCACCCGGAGGCCTTCGCGGACAACGCGGCGCTGCAGGTGCTGGACGTGAGCCGCAACAACCTGACCTCCCTGAACATCAGCTCCCTGATCGGCCTGCCGGCGCTGCGCTCGCTGGGGCTCAGCGGGAACCCGTGGCGCTGCGACTGCGACGCCGAGGACCTGTGCCTGTGGGTGCAGATCGAGGGCTTCAAGTTCCAAGACGAGTCAAGGACGCTGTGCCGGGGGCCCCCTGCTCTCACCGGGCACCGGCTGGCGGAGGTGGGTCTGCGGCTGCGGCTGGACTGCCACCAGGCCCTGGGCTACTGGGACTACCTCTTCTTCATTGGCATTGGCTTCGTCATCTTCTCGGCGGGCACGGTGTCGGCCTGGGTCATGGGTGTGCTCATGGTGCTGTACGAGCGCTACgacaagaggaagatggatgagAACGACGACGAGGAGGATGACGGCGGCGGGTGTGGGGGCGGCGGGCACTCGTCGTGCGGGCACTCGGGGGGCGGGCACTCGGGGGGCGGGCACTCGGGGGGCAGCCAGGGCAACGGGGACCTCACCAAGCCCGTCCTGGAGGTctga

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 52-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005316 True 1269 mRNA 0.67 2 21641391 21652788

Neighbor

gene id symbol gene type direction distance location
AMCG00005315 NA coding upstream 6224 21630980 ~ 21635167 (+)
AMCG00005314 NA coding upstream 16785 21622078 ~ 21624606 (+)
AMCG00005313 NA coding upstream 23210 21606202 ~ 21618181 (+)
AMCG00005328 ipo13,LOC107573327,LOC105910849,LOC107719407 coding upstream 51708 21583176 ~ 21589683 (+)
AMCG00005327 NA coding upstream 100486 21529222 ~ 21540905 (+)
AMCG00005317 NA coding downstream 9561 21662349 ~ 21666890 (+)
AMCG00005322 NA coding downstream 24799 21677587 ~ 21679103 (+)
AMCG00005339 ralgps2,LOC107581502,LOC107712857 coding downstream 54554 21707342 ~ 21708394 (+)
AMCG00005336 LOC106584283,LOC106613957 coding downstream 69792 21722580 ~ 21727870 (+)
AMCG00005337 NA coding downstream 80593 21733381 ~ 21737650 (+)
G146815 NA non-coding upstream 242420 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 312489 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 576483 21063973 ~ 21064908 (+)
G146703 NA non-coding upstream 773985 20867206 ~ 20867406 (+)
G146701 NA non-coding upstream 785473 20855711 ~ 20855918 (+)
G146915 NA non-coding downstream 57569 21710357 ~ 21712783 (+)
G146928 NA non-coding downstream 92091 21744879 ~ 21745451 (+)
G147022 NA non-coding downstream 295298 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 297540 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 303813 21956601 ~ 21957045 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 69070 21566638 ~ 21572321 (+)
G146790 NA other upstream 300679 21337432 ~ 21340712 (+)
AMCG00005280 NA other upstream 838194 20797458 ~ 20803197 (+)
AMCG00005286 NA other upstream 938919 20699486 ~ 20702472 (+)
G146596 NA other upstream 971222 20661926 ~ 20670169 (+)
AMCG00005340 ralgps2,LOC106531732 other downstream 27920 21680708 ~ 21704518 (+)
G146952 NA other downstream 158944 21811732 ~ 21848136 (+)
AMCG00005345 NA other downstream 230411 21883199 ~ 21887568 (+)
G147021 NA other downstream 292770 21945558 ~ 21947991 (+)
G147025 NA other downstream 299781 21952569 ~ 21952882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_03872287_03913487 LRRC52, LRRC26 coding CI01000051 null 3871764 ~ 3913487 (-)