AMCG00005317


Basic Information

Item Value
gene id AMCG00005317
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21662349 ~ 21666890 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005317
ATGACTGACCTGGGGATTAGGCAGAATTACAGCGACATTTATCACCATGGAACCAGCCTGACACCAGCACACACCCACATCAACGCCACCGCGACACTGCTGTACAGCACGGCACTAGACTCTGCTTCTCAATCGGCCTCGGCGGTGCTGGCGGGTCAGGCTCACCTGCGCGACGCTGCCGTCCTGTGCGCGGCTGCCGCTCCGGATCCGGATCACACTGCGCCGGCCGGtgtcgcAGACCCCTCCCCGTCCTGCTGCGACGCTCGTCCTGCACTTTCCGACTGTAACCCTGACTTCCTGCTCCTGCGGCTCCAGGCTGAGCGCGTCTCTCCGCGGAAGAAACTGCACACGAGCAGCACCAGCATGTCTTTCCTGCGGGGGCGGCTGCCCTGGGCGTGCGGGGCCGTGCGGGGTCTGAGCGCCGCCGTGTGCGCTGCGGGCCGGGCGGGAGCTCCGGCGGCTCCGGgcgTGGTGGAGGTGGTGATGTGTCGGCACCGCGCCCGCAACGCCCTGGGCAAGGTGTTTGTGAGCCAGatgAGGGAGCTGCTGTCATCTCTGCACTGTGACTCGGGGGTCCGGGTGGTGCTGTTTCGCACCGTGCTTCCGATGCCCACGATCGCGGCGCTGGATGGCGTGGCCCTTGGGGGGGGGCTGGAGCTGGCGCTGGCCTGTGACCTCCGCACTGCCGCCTCCACTGCTCAGATGGGCCTGATTGAGACCACCAGGGGGCTGCTGCCTGGAGCAGGGGGCAGTCAGCGGTTGCCGCGCACGGTGGGGGTGGCCGTGGCGAAGGAGCTGATCTTCACAGGGGAGCGCGTGGGGGGGGCGCGGGCGCTGGAGCTGGGCCTGGTGAACCGGGCCGTGGAGCAGAACCCGGCGGGAGACGCAGCGCACCAGGCCGCCCTGAGCCTGGCCAGAGCCATCCTGCCTCAGGCTCCGGTGGCCGTGCGGATGGCGAAGGAGGCCATAACCCTGGGACTGGAGGTGAACGTCGCCACAGGGATGGCCATCGAGGGCATGTGCTACGCCAGGGTCATCCCCACACGGGACCGGCGGGAAGGCATGGATGCCTTCATCCAGAAGAGGGCGCCACACTACACCGGGGAGTGA

Function

GO:

id name namespace
GO:0006412 translation biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005317 True 1110 mRNA 0.68 11 21662349 21666890

Neighbor

gene id symbol gene type direction distance location
AMCG00005316 LOC107721804,LOC107712838,LOC105910841,LOC107597850,LOC101160230,LOC107581484 coding upstream 9561 21641391 ~ 21652788 (+)
AMCG00005315 NA coding upstream 27182 21630980 ~ 21635167 (+)
AMCG00005314 NA coding upstream 37743 21622078 ~ 21624606 (+)
AMCG00005313 NA coding upstream 44168 21606202 ~ 21618181 (+)
AMCG00005328 ipo13,LOC107573327,LOC105910849,LOC107719407 coding upstream 72666 21583176 ~ 21589683 (+)
AMCG00005322 NA coding downstream 10697 21677587 ~ 21679103 (+)
AMCG00005339 ralgps2,LOC107581502,LOC107712857 coding downstream 40452 21707342 ~ 21708394 (+)
AMCG00005336 LOC106584283,LOC106613957 coding downstream 55690 21722580 ~ 21727870 (+)
AMCG00005337 NA coding downstream 66491 21733381 ~ 21737650 (+)
AMCG00005338 NA coding downstream 70794 21737684 ~ 21740828 (+)
G146815 NA non-coding upstream 263378 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 333447 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 597441 21063973 ~ 21064908 (+)
G146703 NA non-coding upstream 794943 20867206 ~ 20867406 (+)
G146701 NA non-coding upstream 806431 20855711 ~ 20855918 (+)
G146915 NA non-coding downstream 43467 21710357 ~ 21712783 (+)
G146928 NA non-coding downstream 77989 21744879 ~ 21745451 (+)
G147022 NA non-coding downstream 281196 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 283438 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 289711 21956601 ~ 21957045 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 90028 21566638 ~ 21572321 (+)
G146790 NA other upstream 321637 21337432 ~ 21340712 (+)
AMCG00005280 NA other upstream 859152 20797458 ~ 20803197 (+)
AMCG00005286 NA other upstream 959877 20699486 ~ 20702472 (+)
G146596 NA other upstream 992180 20661926 ~ 20670169 (+)
AMCG00005340 ralgps2,LOC106531732 other downstream 13818 21680708 ~ 21704518 (+)
G146952 NA other downstream 144842 21811732 ~ 21848136 (+)
AMCG00005345 NA other downstream 216309 21883199 ~ 21887568 (+)
G147021 NA other downstream 278668 21945558 ~ 21947991 (+)
G147025 NA other downstream 285679 21952569 ~ 21952882 (+)

Expression


Co-expression Network