AMCG00005328 (ipo13,LOC107573327,LOC105910849,LOC107719407)


Basic Information

Item Value
gene id AMCG00005328
gene name ipo13,LOC107573327,LOC105910849,LOC107719407
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21583176 ~ 21589683 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005328
GCGCTGCTGGAGCAGGTGGAGCAGTGGCAGGGCTTCCTGGCTCTGGTCAACATGATCATGTTCTGCACGGGCATCCCCGGGCACTACCCAGTCAACGAGACCACCAGCTCCCTCACCCTCACCTTCTGTGCAGCCAAGCTGTGGGCTGGTTGTCAGAGCTGGGACAGTGACACTCTGAGAGGCTGGGCTCTGTGCTGCTGTCTGATTGGCTCTGTGCGGCtcGATGACATCCTGTCCTTCGAGGCGGAGAAGCAGGCTCTGTACCTGCAGGTCTACAGGCCCGTCTACTTCCAGCTGGTGGACGTGCTCCTGCACAAGGCGCAGTTCCCCAGCGACGAGGAGTACGCCTCCTGGTCCAGTGACGAGAAGGAGCAGTTCCGCATCTACAGggtGGATATCTCCGACACGCTGATGTATGTGTTTGAGATGCTGGGGGTGGAGCTGCTCAGTAACCTGTACGACAAGCTGGGCCGCCTGCTGACCAACACGGACCAGCCGGCCTCCTGGCAGcaCACAGAGGCCCTGCTCTATGGGTTCCAGTCCATCGCAGAGACGATCGATGTGAATTATTCGGATGTCATCCCCGGCCTGATCGGGCTGATCCCGCGCATCAGCATCAACAACGTGCAACTGGCCGACACGGTCATGTTCACTATAGGCGCCCTGGCGGAGTGGCTGGCAGACCACCCTGTGATGCTGAGCAGTGTCCTCCCGCTGGTGTTGCACGCGCTGGGGAATCCCGAGCTCTCGGTGTCCAGCGTCTCCACACTCAAGAAGATCTGCCGCGAGTGTAAACACGACCTGCCGCCCTACGCAGCCAACATCGTGGCCGTGTCTCagGAGGTCCTGATCAAACAGATCCACAAGACCAGTCAGTGCATGTGGCTCATGCAGGCCCTGGGGTTCCTGCTGTCCGCTCTGCCGGTGGAGGAGATCCTGAGGAACCTGCACTCCCTCATCACGCCATACATCCAGCAGCTGGAGAAGCTGGCAGACGAAACGCCCAACCCCTCCAACAAGCTCGCCATCATCCACATCCTGGGGCTGCTGTCCAACCTGTTCACCACTCTGGACGTGACGcggcaggaggaggagggcgaggGAGCGCCGCCTGCCAAGACCACGCCGCCCGAGCCGGGGCCCAACCCGGTGGTGGTCGTGCTGCAGCAGGTGTTCGCTCTGATCCAGACCGTCCTCAGCAAGTGGCTGAACGACTCGCAGGTGGTCGAGGCGGTGTGCGCGATCTTTGAGAAGTCCGTGAAGACGCTGCTGCATGACTTCGCCCCCATGGTGTCCCAGCTGAGCGAGATGCTGGGCCAGATGTACAGCACCATCCCACAGGCCTCTGCCCTCGACCTCACACGCCAGATGGTTTACATCTTCGCCAGCCAGACGGACCACTTCAGCCCCATCAAGGCCCTGTTCGAGCTGGTCACCTCCGTCACGCTCAGCATCTTCCAGCAAGGTACAGGccggcgggggtgggggggcagctccTCTCAGAGCGCGTCTCTAGAGCGCCTTCGAGCCGCGGCAGCCGTACGGCCGGTGCCCCAGTACCGTCTGACCGGCCCGGCCCACGCTGGCACCTCCTCAGGGTCGCGGGTCTCTCCGCAGCCCGTGAACGGGGCACTGACAGGGTCACGGCGCCGGGAGTCACATCCCTGCCGCGCCGCTGACCCGCTGACCTCAGAGCTGTGA

Function

symbol description
ipo13 Predicted to enable small GTPase binding activity. Acts upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: importin-13 isoform X2

GO: NA

KEGG:

id description
K25202 IPO13, RANBP13; importin-13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005328 True 1701 mRNA 0.63 13 21583176 21589683

Neighbor

gene id symbol gene type direction distance location
AMCG00005327 NA coding upstream 42271 21529222 ~ 21540905 (+)
AMCG00005326 NA coding upstream 73564 21499408 ~ 21509612 (+)
AMCG00005325 hook1,LOC106613947,LOC107737379 coding upstream 103960 21465568 ~ 21479216 (+)
AMCG00005311 NA coding upstream 125939 21403474 ~ 21457237 (+)
AMCG00005303 NA coding upstream 523887 21050477 ~ 21059289 (+)
AMCG00005313 NA coding downstream 16519 21606202 ~ 21618181 (+)
AMCG00005314 NA coding downstream 32395 21622078 ~ 21624606 (+)
AMCG00005315 NA coding downstream 41297 21630980 ~ 21635167 (+)
AMCG00005316 LOC107721804,LOC107712838,LOC105910841,LOC107597850,LOC101160230,LOC107581484 coding downstream 51708 21641391 ~ 21652788 (+)
AMCG00005317 NA coding downstream 72666 21662349 ~ 21666890 (+)
G146815 NA non-coding upstream 184205 21398676 ~ 21398971 (+)
G146782 NA non-coding upstream 254274 21326532 ~ 21328902 (+)
G146749 NA non-coding upstream 518268 21063973 ~ 21064908 (+)
G146703 NA non-coding upstream 715770 20867206 ~ 20867406 (+)
G146701 NA non-coding upstream 727258 20855711 ~ 20855918 (+)
G146915 NA non-coding downstream 120674 21710357 ~ 21712783 (+)
G146928 NA non-coding downstream 155196 21744879 ~ 21745451 (+)
G147022 NA non-coding downstream 358403 21948086 ~ 21948618 (+)
G147024 NA non-coding downstream 360645 21950328 ~ 21950587 (+)
G147027 NA non-coding downstream 366918 21956601 ~ 21957045 (+)
AMCG00005329 ipo13,LOC103463745,LOC105910849 other upstream 10855 21566638 ~ 21572321 (+)
G146790 NA other upstream 242464 21337432 ~ 21340712 (+)
AMCG00005280 NA other upstream 779979 20797458 ~ 20803197 (+)
AMCG00005286 NA other upstream 880704 20699486 ~ 20702472 (+)
G146596 NA other upstream 913007 20661926 ~ 20670169 (+)
AMCG00005340 ralgps2,LOC106531732 other downstream 91025 21680708 ~ 21704518 (+)
G146952 NA other downstream 222049 21811732 ~ 21848136 (+)
AMCG00005345 NA other downstream 293516 21883199 ~ 21887568 (+)
G147021 NA other downstream 355875 21945558 ~ 21947991 (+)
G147025 NA other downstream 362886 21952569 ~ 21952882 (+)

Expression


Co-expression Network